Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01183 ATGGCCGATACGAAGGAGGAAAAGACAATGCCTTTGGAGCTGGCGATTCAGAGGGAGCTATCATATAGAAGAAAGATAGAAGCTTTACGCTTGCATCCAAACGACAAGCCCATTAACGAGCTTCTACCTTTGCAaATTATTTCATCAGGTCATGCTTCTCATCCAACGCCATTGCCAGGTCCAAGTTCAGTTCCAATTTCAAGTCCATGCATTTCAGGAACTAAACGAAAAGAACCAACAAGCAGTACCAATCATCAATTTCTGCAACATGAACCAGTGAGCAGTACTAAACCAGTTAGTACCACTCATCCTCCTCTGCAATATGAACCGAGAAGCAGTGCTAATCATCAAAATCTGCAACATGAATCAATGAACAATGCTGCTGGTCATCATCCTTTGCAACGTGTTATTCCATCAAGTCAGGCTTCTCATCCAAAGCAACTGCCAGCTCCAACTTCAATCCCAATTTCAAGTCCATGCATTTCATCAGGaactaaacaaaaagaacCAACAAGCAGTAGTAATCATCAAGGTCTGCAGCATGAACCAATGAGCAACACTTCTCGTCACCATCCCATGCAACATGAACCTATGAATAGAACCACTTATCCTCCTCTCCAATATGAACCAAGAAGCAGCAGTCATCATTCACTTCTGCAAAATCCACGAGATAGCAATCTCAGTTACAAGCCTGAAACAGATTATTTATACTGCAAAATCTGCAAAGTAACCTGCTCAAGTCCATTCAACCTGAAGCAGCATTTTGGAGGGCATAAGCACAGAGCTAAAGTGCAAGAGCAGGAGTTCATGCAAAAAGCTGGGATAAAGAACAAAAGCAATCAGAAGCATTGGTGTGAATTGTGTAAAATTGCTTGTACAAGTGAAGACTTGCTGGAGATGCACTTTCGAGGTCACAAGCACCTGGCTGAAGTGAACAAGTTACAAACAGGCAAGCAAGGTGGGGTGATCTCTAATCAGCGAAAATGGTGTGAAATATGCAACATATGGTGCTCAGACGAACTTGCTTTCAGACAGCATCTTCAAGGTAAAAAGCACATCTATCAACTGCATAAAATggatattta 1085 0.4138 MADTKEEKTMPLELAIQRELSYRRKIEALRLHPNDKPINELLPLQIISSGHASHPTPLPGPSSVPISSPCISGTKRKEPTSSTNHQFLQHEPVSSTKPVSTTHPPLQYEPRSSANHQNLQHESMNNAAGHHPLQRVIPSSQASHPKQLPAPTSIPISSPCISSGTKQKEPTSSSNHQGLQHEPMSNTSRHHPMQHEPMNRTTYPPLQYEPRSSSHHSLLQNPRDSNLSYKPETDYLYCKICKVTCSSPFNLKQHFGGHKHRAKVQEQEFMQKAGIKNKSNQKHWCELCKIACTSEDLLEMHFRGHKHLAEVNKLQTGKQGGVISNQRKWCEICNIWCSDELAFRQHLQGKKHIYQLHKMDI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01183 361 MobiDBLite consensus disorder prediction 140 225 - -
Bva06g01183 361 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 120 354 - -
Bva06g01183 361 MobiDBLite consensus disorder prediction 52 112 - -
Bva06g01183 361 MobiDBLite consensus disorder prediction 65 112 - -
Bva06g01183 361 ProSitePatterns Zinc finger C2H2 type domain signature. 285 307 IPR013087 -
Bva06g01183 361 PANTHER ZINC FINGER RNA-BINDING PROTEIN 120 354 - -
Bva06g01183 361 MobiDBLite consensus disorder prediction 205 225 - -
Bva06g01183 361 SUPERFAMILY beta-beta-alpha zinc fingers 276 313 IPR036236 -
Bva06g01183 361 SUPERFAMILY beta-beta-alpha zinc fingers 230 270 IPR036236 -
Bva06g01183 361 SMART ZnF_U1_5 280 314 IPR003604 GO:0003676|GO:0008270
Bva06g01183 361 SMART ZnF_U1_5 325 359 IPR003604 GO:0003676|GO:0008270
Bva06g01183 361 SMART ZnF_U1_5 233 267 IPR003604 GO:0003676|GO:0008270
Bva06g01183 361 Gene3D Classic Zinc Finger 277 320 - -
Bva06g01183 361 Gene3D Classic Zinc Finger 226 276 - -
Bva06g01183 361 Gene3D Classic Zinc Finger 321 361 - -
Bva06g01183 361 SUPERFAMILY beta-beta-alpha zinc fingers 325 356 IPR036236 -
Bva06g01183 361 Pfam Zinc-finger of C2H2 type 284 307 - -
Bva06g01183 361 Pfam Zinc-finger of C2H2 type 329 352 - -
Bva06g01183 361 Pfam Zinc-finger of C2H2 type 236 260 - -
Bva06g01183 361 MobiDBLite consensus disorder prediction 140 192 - -
Bva06g01183 361 SMART c2h2final6 283 305 IPR013087 -
Bva06g01183 361 SMART c2h2final6 236 258 IPR013087 -
Bva06g01183 361 SMART c2h2final6 328 352 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01183 238 356 C2H2 Transcription Factor Family AT5G61190 25.325 1.50e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g01183 zf-met 4.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01183 - - ccaj:109791260 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01183 06 9279956 9281329 Bva06g01183 06 9279956 9281329 ECH