Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01182 ATGGCTGAGGAGAGACCTcaagatattaatattatgtcaGTGGAGCTAGCAATTCGAAGAGAGCTGGCATATCGGAAAAAGGTTTCCATGATGCAGTTGCAATCAGATGATTCTGCCGAACATTTGATTCCTTCCGAGTCTTCAAGTTCAGCTTTGAGTTCTGGCCCCCATGCAAGTCCTAGCCTATTAGGAATTAAGCGGCAAGCACCAAGTAGCAATTTTGAATTCCTACCAGTTCAACAGCAAGAGCCACGATTTGATAGTCATGtgtacaagaaaaaaagagataacCTGTTTTGCGCTGTCTGCCAAACAGCATGCTCAAGTGTTATCTCTTATAAGCAACATCTTAAAGGCCGGAGACATAATGCTCAACTGCACGAGTTGAAATCTGGCAGGAAAGATATAGCCGAGGTTGCTCAAGTTGGGAGTCAGCGACAGAAATGCCAAATATGTGATGTTTGGTGCATGAACGTTGATTCACTAAAACAGCATTTGGCAGGCCAAAAGCACAAGTTTCGATTAGAAAAGTTGCGATTGAATATGAAAGGTGGTCGAGCGACagcaaagaagagaagattcTGCTATCTGTGTAAGATTTGGTGCCATGATGAGTATTCGTTGCAGATGCACCTCAAAGGGAAACAGCATCTCGACCAACTCAATGCTGCTAAGCAGAGAAAGAGGGGCAAAGGGGAGAAAGTGCATAATATCTTCAGTACAAATATCTCCTG 734 0.4074 MAEERPQDINIMSVELAIRRELAYRKKVSMMQLQSDDSAEHLIPSESSSSALSSGPHASPSLLGIKRQAPSSNFEFLPVQQQEPRFDSHVYKKKRDNLFCAVCQTACSSVISYKQHLKGRRHNAQLHELKSGRKDIAEVAQVGSQRQKCQICDVWCMNVDSLKQHLAGQKHKFRLEKLRLNMKGGRATAKKRRFCYLCKIWCHDEYSLQMHLKGKQHLDQLNAAKQRKRGKGEKVHNIFSTNIS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01182 244 SUPERFAMILY beta-beta-alpha zinc fingers 146 181 IPR036236 -
Bva06g01182 244 SMART ZnF_U1_5 95 129 IPR003604 GO:0003676|GO:0008270
Bva06g01182 244 SMART ZnF_U1_5 190 224 IPR003604 GO:0003676|GO:0008270
Bva06g01182 244 SMART ZnF_U1_5 144 178 IPR003604 GO:0003676|GO:0008270
Bva06g01182 244 Gene3D Classic Zinc Finger 186 226 - -
Bva06g01182 244 Gene3D Classic Zinc Finger 78 129 - -
Bva06g01182 244 PANTHER ZINC FINGER RNA-BINDING PROTEIN 43 224 - -
Bva06g01182 244 Pfam Zinc-finger of C2H2 type 99 122 - -
Bva06g01182 244 Pfam Zinc-finger of C2H2 type 149 171 - -
Bva06g01182 244 SUPERFAMILY beta-beta-alpha zinc fingers 77 130 IPR036236 -
Bva06g01182 244 MobiDBLite consensus disorder prediction 37 64 - -
Bva06g01182 244 SUPERFAMILY beta-beta-alpha zinc fingers 191 227 IPR036236 -
Bva06g01182 244 MobiDBLite consensus disorder prediction 37 57 - -
Bva06g01182 244 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 43 224 - -
Bva06g01182 244 SMART c2h2final6 193 217 IPR013087 -
Bva06g01182 244 SMART c2h2final6 147 171 IPR013087 -
Bva06g01182 244 SMART c2h2final6 98 122 IPR013087 -
Bva06g01182 244 Gene3D Classic Zinc Finger 141 185 - -
Bva06g01182 244 Pfam Zinc-finger double-stranded RNA-binding 194 217 IPR022755 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01182 100 234 C2H2 Transcription Factor Family AT5G61190 26.163 1.54e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01182 - - qlo:115965927 181.03