Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01175 ATGAGTCAGTGTTTGGTACCAAACTGGAATCTGAAACAACAAAGACTGGTCGAAGAGGGGGAAGAGGGCAGCAGATCCTCTCACGTGCACAAGCAGCAGAACGACCCTGCTACTGCCCACCTTGTCCCCATGTCAGACTATGAGGTCGCAGAATTAACATGGGAAAATGGCCAGCTAGCCATGCACGGGCTTAGTGGGCTCATGCCGACGGCCCAGGCTAAGCCCACATGGAATAGGACCAGTGACACGTTAGAATCCATTATTCATCAAGCCACAAGGCAATATCAAAAACCCAAGGTAGATTTCACAGGACAAGACCATCCTCCTACCATTGCAAGTACAAGCACTACCATTGCATCCTCCGGCGGGAAACGAGGTGAGAGCACCAACCAGGTCCAAACTGTGCCGGTAATGACGAGGAAGCGAACACGGTCGGATTCCAAATACTGCAGCGAGAGAAATTTTAGTCCTATTGTTAACGTTACAGAGGAATGCGAGTATCCCAGTGTTTGTGCCAGTGCCAGTGCCACGTTCTGCAGAGACAACGACACAACTATGATGACTTGGGCGTCTCTTGATTCCGGTCGGAGCTTGGAGAACAAAACTCTCCACGAGGATTCAGTTTGTCACTGTGAACAGGAAAGCCGAGACAAACACGACCAAGACAGGGACGCCAAGGTTGAAGTAAGCCGATCCAACTCAACAAGATCTAATCGATCTGCTGCCATCCATAACCAGTCAGAGCGAAGACGAAGGGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAACTCATGTAAGACTGATAAAGCTTCGATGCTGGACGAGGTGATTGAATACTTAAAACAACTTCAAGCACAGATCCAGATGATGAGTACTGTGAGAAACATGCCCCAGATGATGATGCCTTTGGCTATGCAACAACAGCTTCAGATGGCAATGCTTGCCGCCCGAATGGGGAGTGGCCTTTGCTTGGGCATGGGAATGCTTGGCATTGATAACCACATGCGTGGCAGCACAGCTTCTCCTGTGTCCCTCACCCCACTCAATGTTCAACCTATGCCGCTTGCACATCCTCCATTCGTTGCCGCCACGCCCTTCGTGGTACCTCTTCCTGCACCACTAGCAAAACCTGACACTGCATCAGCAACCACCAATGCCTCCTCGGTTCGTCCTTCTGATCCATATCACGCTATTCTAGCACAATCAATTAATTTAGATCTCCTCAACAACATGGCTGCATTTTACCGGCAACAGATGAGTCCGAACAATCAGGCCAAGACCAACCCATTACAACTATACCGTAGCCAAGGGGATTG 1331 0.4959 MSQCLVPNWNLKQQRLVEEGEEGSRSSHVHKQQNDPATAHLVPMSDYEVAELTWENGQLAMHGLSGLMPTAQAKPTWNRTSDTLESIIHQATRQYQKPKVDFTGQDHPPTIASTSTTIASSGGKRGESTNQVQTVPVMTRKRTRSDSKYCSERNFSPIVNVTEECEYPSVCASASATFCRDNDTTMMTWASLDSGRSLENKTLHEDSVCHCEQESRDKHDQDRDAKVEVSRSNSTRSNRSAAIHNQSERRRRDRINQKMKALQRLVPNSCKTDKASMLDEVIEYLKQLQAQIQMMSTVRNMPQMMMPLAMQQQLQMAMLAARMGSGLCLGMGMLGIDNHMRGSTASPVSLTPLNVQPMPLAHPPFVAATPFVVPLPAPLAKPDTASATTNASSVRPSDPYHAILAQSINLDLLNNMAAFYRQQMSPNNQAKTNPLQLYRSQGD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01175 443 MobiDBLite consensus disorder prediction 212 230 - -
Bva06g01175 443 CDD bHLH_AtPIF_like 239 302 - -
Bva06g01175 443 MobiDBLite consensus disorder prediction 212 252 - -
Bva06g01175 443 PANTHER TRANSCRIPTION FACTOR PIF7 3 432 - -
Bva06g01175 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 315 IPR036638 GO:0046983
Bva06g01175 443 SMART finulus 245 294 IPR011598 GO:0046983
Bva06g01175 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Bva06g01175 443 Gene3D - 234 299 IPR036638 GO:0046983
Bva06g01175 443 Coils Coil 245 265 - -
Bva06g01175 443 Pfam Helix-loop-helix DNA-binding domain 244 289 IPR011598 GO:0046983
Bva06g01175 443 MobiDBLite consensus disorder prediction 17 38 - -
Bva06g01175 443 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 432 IPR031066 -
Bva06g01175 443 MobiDBLite consensus disorder prediction 424 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01175 Bva-Chr6 9246609 9249380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01175 38 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 35.906 1.21e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g01175 HLH 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01175 - - vvi:100262138 372.089