Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01168 ATGAATCATTCATCTGTGCAAATGTACCCCGTACCCCCTTCTTCATTGACCACCTTGCCAACACTCTATCCTCAGCAATCTTACTCTTCAACCCCTTTGTTCTTAACTTTCCCTCAACCGCAATTGCCTTCTATGCTCTCGGATCAGCCTCTTTATCCTCCCGGCGTGGACCCATATGGAAATTCTGCCTTATATGCTGGATACGAAACCCAAACAAAAGATTCTCAGGACCCAAATGGAGTTTCTCAGAACTGGATTGTCACACAAACTGAGCCCATCAGTTATGGAGCTGTTATCCAATCCTCACATGAAACTTCAGTAGCGTCTACAAGTTTGCATGCTACTTGGAAAGACAACACAACTCAATATTTTACTAACGATACTACAGTTTTATCGCCTAATCAAACCAGAGTCACCAAGTCAATGCGGTGTGAGGTTTGCAAAATTGATTGTAATAGCAAAGATGCTTTTGAAAAGCACATATCAggaaagaaacacaaaaagaatttGCAGTCAGAGACTAATCCCACTAGTACAGTATCATCACAAACCTCTCATGCAAGTTTACAAAGTCAAATGAGCAGTTTCTATGGACAAATGTTATTTGGAACTGCAGGTAAGGAGTTAGAGTCTAAGAAGCGGAAGGATACGAGTAGTGGTGCAGTTGTTGATTCAGTAAGGTTTTGCACGATATGCAACATCGTTTGCACCAGTCAAGATGTATTTAGCAAACATCTAGCTGGGAAAAAGCACGCTGCTAAGGTTGGCTTGACATCTCATAATATGATTGGTCCACATCGTGCTGCATTTCAGCGCTATGGTATTGGTTATATTCCAAAGAGAGTCAAGATTGTTCAATCTGTATGGTGTGAAGTTTGCAAGCTCAGTTGTAACAGCAAAGATGTATATATTACGCACTTAACTGGGAAGAAACACCTGAAGAACCAGGAGAAATTATCGATATCGGAAAATGATGCTGGCGATAGTAATAATGCTGCAAATGCTTTGCAACATACAAGAACTCCAATAATTGGGCCGCAAGAAAAGCCAGACGCTGATAAACAAGAAGGGATGGATTCACAAAAATCACAGAAGGCAGTCACTTCTGATGCACAAGAAAAGGATCTAGAGACGAAGAAACTTAAACTAGTAGAAAGTGGAGCTGCAGCAAATGCTGTCCGATGGTGCAATCTATGCAACGTGGTGTGCAACAACGAGACGGTCCTTAATTTTCATCTTGCTGGGAAGAAACACGCTACTATGGTGAAAAAGCAGGCAGAGTCAATAAGAGTAACCACTGCTTG 1304 0.4103 MNHSSVQMYPVPPSSLTTLPTLYPQQSYSSTPLFLTFPQPQLPSMLSDQPLYPPGVDPYGNSALYAGYETQTKDSQDPNGVSQNWIVTQTEPISYGAVIQSSHETSVASTSLHATWKDNTTQYFTNDTTVLSPNQTRVTKSMRCEVCKIDCNSKDAFEKHISGKKHKKNLQSETNPTSTVSSQTSHASLQSQMSSFYGQMLFGTAGKELESKKRKDTSSGAVVDSVRFCTICNIVCTSQDVFSKHLAGKKHAAKVGLTSHNMIGPHRAAFQRYGIGYIPKRVKIVQSVWCEVCKLSCNSKDVYITHLTGKKHLKNQEKLSISENDAGDSNNAANALQHTRTPIIGPQEKPDADKQEGMDSQKSQKAVTSDAQEKDLETKKLKLVESGAAANAVRWCNLCNVVCNNETVLNFHLAGKKHATMVKKQAESIRVTTA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01168 434 Pfam Zinc-finger of C2H2 type 228 251 - -
Bva06g01168 434 Pfam Zinc-finger of C2H2 type 289 312 - -
Bva06g01168 434 Pfam Zinc-finger of C2H2 type 144 166 - -
Bva06g01168 434 Pfam Zinc-finger of C2H2 type 395 418 - -
Bva06g01168 434 Gene3D Classic Zinc Finger 205 258 - -
Bva06g01168 434 Gene3D Classic Zinc Finger 125 173 - -
Bva06g01168 434 Gene3D Classic Zinc Finger 359 426 - -
Bva06g01168 434 PANTHER ZINC FINGER RNA-BINDING PROTEIN 24 254 - -
Bva06g01168 434 SUPERFAMILY beta-beta-alpha zinc fingers 391 425 IPR036236 -
Bva06g01168 434 MobiDBLite consensus disorder prediction 164 185 - -
Bva06g01168 434 SUPERFAMILY beta-beta-alpha zinc fingers 217 255 IPR036236 -
Bva06g01168 434 PANTHER ZINC FINGER RNA-BINDING PROTEIN 280 433 - -
Bva06g01168 434 SMART ZnF_U1_5 139 173 IPR003604 GO:0003676|GO:0008270
Bva06g01168 434 SMART ZnF_U1_5 285 319 IPR003604 GO:0003676|GO:0008270
Bva06g01168 434 SMART ZnF_U1_5 224 258 IPR003604 GO:0003676|GO:0008270
Bva06g01168 434 SMART ZnF_U1_5 391 425 IPR003604 GO:0003676|GO:0008270
Bva06g01168 434 Gene3D Classic Zinc Finger 280 326 - -
Bva06g01168 434 SUPERFAMILY beta-beta-alpha zinc fingers 119 171 IPR036236 -
Bva06g01168 434 SUPERFAMILY beta-beta-alpha zinc fingers 283 319 IPR036236 -
Bva06g01168 434 SMART c2h2final6 288 312 IPR013087 -
Bva06g01168 434 SMART c2h2final6 227 251 IPR013087 -
Bva06g01168 434 SMART c2h2final6 394 418 IPR013087 -
Bva06g01168 434 SMART c2h2final6 142 166 IPR013087 -
Bva06g01168 434 PANTHER - 24 254 - -
Bva06g01168 434 PANTHER - 280 433 - -
Bva06g01168 434 MobiDBLite consensus disorder prediction 323 373 - -
Bva06g01168 434 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01168 Bva-Chr6 9210109 9212627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01168 218 433 C2H2 Transcription Factor Family AT5G61190 32.870 1.94e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g01168 zf-met 2.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01168 - - aprc:113848135 412.149