Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01167 ATGGAAGATCAAGAATTCAAACACGTATGCAAGTTCTGCAGCAAGAGTTTCCCCTGTGGAAGATCCTTGGGAGGTCACATGAGGTCTCATATCACAAATGTTTCAGCTGAAACAGAGGAAAAGCTACTCACAAAGAAGCTTTCGTCTCTCAACAAGAGTGGAAGCAACACTATTAAGGGTGGAGAAACAGGTTCTGAGGCAGGAACTAACACTGGGTATGATCTCAGAGAGAAACGTAAGAAGAGTTGGAGACTCGCAGATTCAAGTGCAGACACTTCACTATTGGACAAGTTATGCAAAGAGTGTGGGAAAGGTTTTCACTCTTGGAAAGCTCTCTTTGGTCACATGAAATGCCACTCAGAGAAAGAACGTGTCTCTGACAGCTTGGAAGATCAAGATTCAGGGACTAACACTACCCAGAAGTTGGTCATGGATGGCCAATCTGACAATGAAGCCGCAGCGCCAAATCGAAGAAGAAGATCCAAGAGAAGAACAAGGTATGTGTTTACTGCTGCAACTTCGTCTTTGTCTTTTGCCAATATTTCCTCTTCTGTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGCAGAGATATAGGTCCTTGGGGTGTTCGCAATTCTGTTGCTGAGTCCTCTGACAATAACTCTGCCAGCTTTGAAGCTCGATCTTCACTTCGAACTAATCTAGTTAGTAAAATTGAGGGAAAGAAGCCAATTTCCAATGCTTCTGAGATTGCAAAATTGACCAAACGAAGTGAAAAGTGTGAGATTGGTAAGTCAGAATCTGCAAATCTCAGCTCTATAGGGAAAAAATCTGAGCTTTTTGGCACTGAGCTTCCAAGGAAAAATGGGTCTAAGATGAATAAAGCCAAGGTCTCAATTGGTGGTTCCAGCAAGCCTGAGAAAGCTATGAAGTCCAAGCCCGATTGTCTGTCAGCACTGGAAAACTCTACAGATGAACTAGGGAAGCACATGGTTCATGAAACAGAGCTGGATTTATTAAAGTCTGGTACTACTAAAAAGTACACTTCAATCAAGAGAAAGTTCTGTGATTCTGAATCAAAGTCAAGTTGCTTAAAAGATTTCGTAAACAAGGATTCAGAAGCTGAATTGAGCAGGAATTCTGATAAGAGAGGCAAATTCGAGTGTACTACTTGCAACAAGATCTTCCACTCCTACCAAGCTCTCGGAGGTCACAGAGCTAGTCATAGAAAAACCAAAGGTTGCTTTTCCTCAAAAAATGAGAACAGTGAAAATAGCATTGAGACTGATCTCTCCCCTGACCCAACAACCGAAAGCAAGCTCATGAAGAACAGTGACACTGACAGTGAATATTTGGTTAAACAAGAATTGGGAGCTTCTGGTTTTGATGAAGCAGACGCAGTTTTGGAGTCTAAGAAGAGCAAAGCCCATGAGTGCCCAATTTGTCTTAAGGTTTTTCCATCTGGCCAAGCATTGGGTGGCCATAAGAGATCCCATTTGGCTAGTGGGTCTGAGAGTAGAAACTTTCAGACACTCGTGCTTCAAGAACCAGTTCCAGAAATCAGGGACTTACTCGATCTTAATCTCCCTGCTTCCACAGAGGAAGAGTGCACTAGCCATGCTGAGAGTTACAGAGCCTGGTGGGTAGGAGGCAACCACAAGCAGGAGGCACTGCTACACTTGATTTCTAACTA 1697 0.4313 MEDQEFKHVCKFCSKSFPCGRSLGGHMRSHITNVSAETEEKLLTKKLSSLNKSGSNTIKGGETGSEAGTNTGYDLREKRKKSWRLADSSADTSLLDKLCKECGKGFHSWKALFGHMKCHSEKERVSDSLEDQDSGTNTTQKLVMDGQSDNEAAAPNRRRRSKRRTRYVFTAATSSLSFANISSSVSEVEQEQEEVAMSLMMLSRDIGPWGVRNSVAESSDNNSASFEARSSLRTNLVSKIEGKKPISNASEIAKLTKRSEKCEIGKSESANLSSIGKKSELFGTELPRKNGSKMNKAKVSIGGSSKPEKAMKSKPDCLSALENSTDELGKHMVHETELDLLKSGTTKKYTSIKRKFCDSESKSSCLKDFVNKDSEAELSRNSDKRGKFECTTCNKIFHSYQALGGHRASHRKTKGCFSSKNENSENSIETDLSPDPTTESKLMKNSDTDSEYLVKQELGASGFDEADAVLESKKSKAHECPICLKVFPSGQALGGHKRSHLASGSESRNFQTLVLQEPVPEIRDLLDLNLPASTEEECTSHAESYRAWWVGGNHKQEALLHLISN 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01167 565 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Bva06g01167 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Bva06g01167 565 SUPERFAMILY beta-beta-alpha zinc fingers 8 119 IPR036236 -
Bva06g01167 565 MobiDBLite consensus disorder prediction 124 165 - -
Bva06g01167 565 MobiDBLite consensus disorder prediction 53 70 - -
Bva06g01167 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 478 505 IPR013087 -
Bva06g01167 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 30 IPR013087 -
Bva06g01167 565 SMART c2h2final6 97 119 IPR013087 -
Bva06g01167 565 SMART c2h2final6 8 30 IPR013087 -
Bva06g01167 565 SMART c2h2final6 388 410 IPR013087 -
Bva06g01167 565 SMART c2h2final6 478 500 IPR013087 -
Bva06g01167 565 MobiDBLite consensus disorder prediction 419 441 - -
Bva06g01167 565 SUPERFAMILY beta-beta-alpha zinc fingers 388 500 IPR036236 -
Bva06g01167 565 MobiDBLite consensus disorder prediction 285 312 - -
Bva06g01167 565 MobiDBLite consensus disorder prediction 53 73 - -
Bva06g01167 565 ProSitePatterns Zinc finger C2H2 type domain signature. 390 410 IPR013087 -
Bva06g01167 565 Pfam C2H2-type zinc finger 99 121 - -
Bva06g01167 565 Pfam C2H2-type zinc finger 477 502 - -
Bva06g01167 565 Pfam C2H2-type zinc finger 388 412 - -
Bva06g01167 565 Pfam C2H2-type zinc finger 8 30 - -
Bva06g01167 565 Gene3D Classic Zinc Finger 385 500 - -
Bva06g01167 565 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 565 - -
Bva06g01167 565 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Bva06g01167 565 ProSitePatterns Zinc finger C2H2 type domain signature. 480 500 IPR013087 -
Bva06g01167 565 ProSiteProfiles Zinc finger C2H2 type domain profile. 388 415 IPR013087 -
Bva06g01167 565 MobiDBLite consensus disorder prediction 131 146 - -
Bva06g01167 565 MobiDBLite consensus disorder prediction 411 449 - -
Bva06g01167 565 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01167 Bva-Chr6 9205328 9207569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01167 422 536 C2H2 Transcription Factor Family AT1G26610 44.828 7.81e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g01167 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01167 - - gmx:102666705 613.994