Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01154 ATGGCATCGGCAAAGCGATGCCACTATGAAGTCCTCGGTCTCCAGCGCGACTGCACAGCCGACGAGATCCGATCGGCTTACAAGCGTCTTGCCCTTCAACGCCATCCTGACAAGCTCGTTCAATCCGGCTTGTCTCAAGCCGAAGCTACAGCTCAATTCCAAGAGCTGCAACATGCATACGAGGTCCTCTCCGACCCAAAGGAGCGAGCTTGGTACGACTCTCACCGTTCTCAGATTCTCTTTTCCGATCCTAACTCGTTCGGCAACTCAGACCTTAACTCTTTTATACCTaatctcttctccttcttctctaATACCGTTTATTCTGGGTACTCAGACTCTGGCAAGGGCTTCTATAAGGTCTATTCTGATGTGTTTGATAAAATCCATGCCAATGAGATCAATTTCGCAAATAAATTAGGTTTAGGTATTGATGCTGTACGACAAGCTCCTCTCATGGGCAATTTGGAAAGTCCTTATGCCCAGGCAACAGCATTTTACAATCATTGGTTGGGTTTTTCTACGGTGATGGATTTTTGTTGGGTGGACCAGTACGACGTGATGGCTGGTCCCAACCGAAAGTCGAGGCGAGTGATGGAAGATGAGAACAAGAAGCTAAGAAAGAAGGCAAGGAAAGAATACAATGAAACAGTGCGGGGATTGGCGGAGTTTGTCAAGAAGAGGGATAAAAGGGTGATTGACATGATGATAAAGAAGAATATGGAGATTGAGAAGAggaaagaggaagagagggagaggaagaagaagttagaaaaggagaagatgGAGAGAGTGATGGCATATGAGGAGCCTGAATGGGCAAAAATTGACGAGGATGGAGAAAATGAGGCAAACTGTTATGAAGAGTTAGAGGAAGAGAACAAGAGAAAGGATGCTGAGAAGGAGTTGTATTGTGTAATCTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCTGAATTTAGGGACTCACTTGGTGATGATGAGAGAGTTGAAGAGGATATAGACGTAGAGTTGGAAGGAGAAGGGAAGGAGATATTGGAAAGTGATGAGGAGGGAGTCGAGGTGAATAATGATAAGTTAGGGCAGACTGATAATGAGATTGACGAGTTAGAGGGTAGAATTAGAGGGAACATCCACATTGCAGAGGAAGATGCTAGAAATGGGattgattttaataatgatgaagatgaatatTTCGATTCCAAGGGTGCAAAGGAGGGGGAGGAGGTTGGTGTCTCAGATGGTTttgataatgatgatgatgaaatgGATGTACTTGAAGCTATGGTGGCTGGGCACAAGAGCAGAAAAAATGCTGCTTCAAAGCATGAACCCAGGGCTTCTGAGACTTCCAATAAAATTGATAGTGAGAGTGATGGGGTTGGCTTTGAGGAACATGACAAACGAAAAAGCACTAGAAAGAACCGTAGAGCCAATAAAGAGAAGGGTAGAAAAAATTGGGAAGACCTTTCAATGGGCGCTGTCAATGTCAACGCTGATCATCAGAATATGAACAATGTCGAAAATGGTAATTCTCATACAGAGGAGTGTTCTTCCCAATCTTTTGTAGAAGAGGAAAGTAATGGTAATGAGAACGAGCAGATAGGGAAACATAAGAAGACTTCAAATCAATCCGCTGATAAAAAAGGAGCTGCAAAGGACACAAAATCCAAAGCAAAAAGTTCGtccaaaggaagaaaagcCAAGGTTGCATCGAAGAATCAAGGCAATATTTGTGAGACCTGTGGAGAGGAATTTGATTCAAGGAATAACTTACATAAACATTTGGGTGATACTGGTCATACTTCATTAAAATATCGATG 1865 0.4027 MASAKRCHYEVLGLQRDCTADEIRSAYKRLALQRHPDKLVQSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSFGNSDLNSFIPNLFSFFSNTVYSGYSDSGKGFYKVYSDVFDKIHANEINFANKLGLGIDAVRQAPLMGNLESPYAQATAFYNHWLGFSTVMDFCWVDQYDVMAGPNRKSRRVMEDENKKLRKKARKEYNETVRGLAEFVKKRDKRVIDMMIKKNMEIEKRKEEERERKKKLEKEKMERVMAYEEPEWAKIDEDGENEANCYEELEEENKRKDAEKELYCVICGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDDERVEEDIDVELEGEGKEILESDEEGVEVNNDKLGQTDNEIDELEGRIRGNIHIAEEDARNGIDFNNDEDEYFDSKGAKEGEEVGVSDGFDNDDDEMDVLEAMVAGHKSRKNAASKHEPRASETSNKIDSESDGVGFEEHDKRKSTRKNRRANKEKGRKNWEDLSMGAVNVNADHQNMNNVENGNSHTEECSSQSFVEEESNGNENEQIGKHKKTSNQSADKKGAAKDTKSKAKSSSKGRKAKVASKNQGNICETCGEEFDSRNNLHKHLGDTGHTSLKYR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01154 621 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 621 IPR044648 -
Bva06g01154 621 SMART c2h2final6 303 327 IPR013087 -
Bva06g01154 621 SMART c2h2final6 591 615 IPR013087 -
Bva06g01154 621 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Bva06g01154 621 Coils Coil 233 265 - -
Bva06g01154 621 MobiDBLite consensus disorder prediction 600 621 - -
Bva06g01154 621 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Bva06g01154 621 Gene3D Classic Zinc Finger 291 348 - -
Bva06g01154 621 SUPERFAMILY Chaperone J-domain 4 103 IPR036869 -
Bva06g01154 621 Coils Coil 196 216 - -
Bva06g01154 621 PRINTS DnaJ domain signature 9 27 IPR001623 -
Bva06g01154 621 PRINTS DnaJ domain signature 27 42 IPR001623 -
Bva06g01154 621 PRINTS DnaJ domain signature 48 68 IPR001623 -
Bva06g01154 621 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Bva06g01154 621 MobiDBLite consensus disorder prediction 323 381 - -
Bva06g01154 621 CDD DnaJ 7 65 IPR001623 -
Bva06g01154 621 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Bva06g01154 621 MobiDBLite consensus disorder prediction 400 621 - -
Bva06g01154 621 MobiDBLite consensus disorder prediction 363 381 - -
Bva06g01154 621 MobiDBLite consensus disorder prediction 323 341 - -
Bva06g01154 621 MobiDBLite consensus disorder prediction 510 543 - -
Bva06g01154 621 Pfam DnaJ domain 8 73 IPR001623 -
Bva06g01154 621 MobiDBLite consensus disorder prediction 440 485 - -
Bva06g01154 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 591 620 IPR013087 -
Bva06g01154 621 SUPERFAMILY beta-beta-alpha zinc fingers 296 338 IPR036236 -
Bva06g01154 621 MobiDBLite consensus disorder prediction 342 362 - -
Bva06g01154 621 MobiDBLite consensus disorder prediction 400 426 - -
Bva06g01154 621 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Bva06g01154 621 Gene3D DnaJ domain 1 87 IPR036869 -
Bva06g01154 621 MobiDBLite consensus disorder prediction 544 575 - -
Bva06g01154 621 ProSitePatterns Zinc finger C2H2 type domain signature. 593 615 IPR013087 -
Bva06g01154 621 SMART dnaj_3 6 68 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01154 Bva-Chr6 9105293 9107980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01154 3 621 C2H2 Transcription Factor Family AT1G74250 52.672 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva06g01154 DnaJ 1.7e-21 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01154 K09506 - gmx:100788305 764.607