Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01147 ATGCCTTTCTTTGGTAGAGTCGGGAATCTACTAAAGCAAGCGGTAAACAAGCAGATCAGTTCACAATCAAGTTCATCGCCATCTGTTTTTCAGTCTATAAGATGCATGTCATCCGCGCCAAGCTCAAAGCTGTTTATCGGAGGCCTACCGTATTCTACCGATGAGAGAAGTTTGCAGGAAGCTTTTTCTAGATATGGCACAGTTGTTGACGCAAGGGTAGTTAAGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACTTTCACTTCAGTTGAAGAGGCATCAAGTGCCATTCAGGCCTTGGATCAAAAGGACCTTCATGGCCGCATAGTTAGTGTAGACTATGCTAATGACAGGACTCGTGGCTTCAGCAGGGGTGGTTATGGTAATGCTCCCTTTGGGGGTTCTGGAACTGGTGGTCGCTATGGTGATAGTGGTGCATATGGTAGCAATGCTGCTGGAGGTTATGGCAGTGGTGGATTTGGTCCGGGAAGCTATGCGTCAGGTAGCAATTACGGTAGTGGAGGTTCTGGCAATAACTATGGCACTGATAGTTTTGGAAGTGGAAGCCCTGGTGACAATTACAGCGGAAGTGGagtaaattatgaaaatgatggtAACTTTGCAAGTGGAAGTACTGGAGGTTATGGTGGTAACACCGGAAACTTTGGTGTTGCTGGTGCTGGTGGAGGAAGTGATAACTATGGTCGTGCTCCTGGTTTTGGTAGCAGTGATAATTTTGGGAGTTCCGGGGTCTTGGTGGAAGTGATAGTTATATTAGTGCTGGTTCCGGTGGTGGTAGTGGTGGTTTCACTGGTAGTGGATTTGATGAAAGTGAGGGACTTGGATATGGGAGAAGTGGTAAATTGGATAGCAAAGAAAGTGGCAATCTTGGTGGGGATATTGGAAATTACGGGGAACCATTGGAAGGAACTCACATGGACGATGCTGACGATGCTAGTGATTTGGCCAAAAGAGCTTGAAAAAATCTTGGTTTCTTA 1007 0.4538 MPFFGRVGNLLKQAVNKQISSQSSSSPSVFQSIRCMSSAPSSKLFIGGLPYSTDERSLQEAFSRYGTVVDARVVKDRETGRSRGFGFVTFTSVEEASSAIQALDQKDLHGRIVSVDYANDRTRGFSRGGYGNAPFGGSGTGGRYGDSGAYGSNAAGGYGSGGFGPGSYASGSNYGSGGSGNNYGTDSFGSGSPGDNYSGSGVNYENDGNFASGSTGGYGGNTGNFGVAGAGGGSDNYGRAPGFGSSDNFGSSGVLVEVIVILVLVPVVVVVVSLVVDLMKVRDLDMGEVVNWIAKKVAILVGILEITGNHWKELTWTMLTMLVIWPKELEKILVS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01147 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Bva06g01147 335 SUPERFAMILY RNA-binding domain, RBD 38 148 IPR035979 GO:0003676
Bva06g01147 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Bva06g01147 335 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 251 - -
Bva06g01147 335 SMART rrm1_1 43 116 IPR000504 GO:0003723
Bva06g01147 335 Gene3D - 9 136 IPR012677 -
Bva06g01147 335 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01147 Bva-Chr6 9073009 9075948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01147 41 132 Eukaryotic Initiation Factors Gene Family AT4G34110 38.043 8.35e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01147 K12741 - gmx:100799124 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01147 06 9073009 9075948 Bva06g01147 06 9073009 9075948 ECH