Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01144 atggTGGAATCAGTGACTTCAGATGCGATTTCTATCTTGCTTGCGAATCCATCGCCGGATTCTTCATCGGAGCTTCCGGAGATTGTCGTCCAAGTTCTAGATCTCAAGCAAAGCGGTAACCGATACATGTTTTCTGCTAGTGatggaaaaaagaagctaAGGGCAATTCTCCCCTCAAGTCAGGATTCGCGGGTCATGTCAGGAAATATTCAGAGCCTGGGTCTCATTCGCATACTTGATTATACTCTCAACGATATCCCAAATAAGTCAGAGAAGTATCTCATTGTTACAAAGTGTGAACCGGTCTGTCCTGCGCTTGAAATGGAGATAAAATCTGAGGTCGAGAGTGGGGAAACTGGTATCtttttggaaccaaagaaagagaacGAAATCAAAAGTGAGGTGAAAAGTGAAGGGGCTGGGATTCTTTCGAAgccaaaacaagaaatagtTGCTAAATCAGCTGCCCAGATCGTGCATGAACACGGAAACATGGCTCCCGCTGCACGAATGGCGATGACACGTAGGGTTCGTCCTGTTGTTTCCCTGAATCCTTATCAAGGCAATTGGACAATAAAGGTGCGTGTTACAAGCAAAGGGAACATGCGCACCTATAAGAATGCAAGAGGGGAAGGTTGTGTATTCAATGTGGAATTGACAGATGAAGATGGCACACAGATCCAAGCAACGATGTTCAATGAAGCTGCAGGGAAATTCTATGAGAAATTTGTACTTGGAAAGGTTTACTATATTTCAAAGGGAACTCTAAAAGTTGCTAACAAGCAGTTCAAAACTGTTCAAAATGATTATGAAATGACGTTAAATGAAAATTCGGAGGTTGAAGAGGCAACCAATGAAGCAAGTTTTGTTCCAGaaactaaattcaaatttgtcCAGATTGATCAGCTGGGTCCTCATGTCAATAGGAACGATCTTGTGGATGTGGTTGGGGTTGTTCAGAATGTGTCTCCATCAATGAGCATTCGTAGGAAGAGTAACAACGAGACTGTCCCTAAACGTGATATTACTATTGCTGACGAAACCAAGAAGACAGTTGTTGTTTCCTTGTGGAATGACCTTGCAACTGGTGTCGGCCAGGAGTTGCTGGACCTTGCTGATAAATCTCCCATAGTGGCCATCAAATCCCTCAAGGTTGGGGATTTTCAAGGGGTTTCCCTGTCAACTATAAGCAAGAGTGCAATTCTAGTAAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTATGATTCTGAAGGTAAAGGTGCTTCAATGGCCTCTGTAGGCTCCAGTTTGAGTCTTGTGTCCAGGAATGGAATAAGATCAATGTACTCTGACCGAGTTTCTCTCTCACATATAACCTCAAATCCATCCTTGGGGGACGACAAGCCTGCGTTTTTCAGTGTTAGAGCATACATAAGCTTTATCAAGCCTGATCAGACAATGTGGTACCGTGCTTGTAAAACTTGTAATAAAAAGGTGACGGAGGCCATTGGTTCTGGCTATTGGTGTGAAGGCTGCCAGAAAACTGATGAAGAGTGCAGATTAAGATACATTTTGGTTGTAAAAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCCGTCTTCAATGAAGAAGCTGAGAAGATTGTTGGGTGCTCTGCTGATGAGCTAGATAACCTGAAGTCACAGGAGGGTGAAGATTCTCCGttccaacaaaaattgaagcaaGTTACTTGGGTTCCTCATCTTATGCGAGTTAGCGTTTCTCAGCATGAGTATATGAATGAGAAGAGACAGAGGATAACAGCCCGATCAGTGGCCCCAGTTGACTTTGCTGCAGAATCAAGATTTCTCTTGGAAGAAATATCAAAGATGAAAACTTCTCAATA 1874 0.412 MVESVTSDAISILLANPSPDSSSELPEIVVQVLDLKQSGNRYMFSASDGKKKLRAILPSSQDSRVMSGNIQSLGLIRILDYTLNDIPNKSEKYLIVTKCEPVCPALEMEIKSEVESGETGIFLEPKKENEIKSEVKSEGAGILSKPKQEIVAKSAAQIVHEHGNMAPAARMAMTRRVRPVVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAGKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEASFVPETKFKFVQIDQLGPHVNRNDLVDVVGVVQNVSPSMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATGVGQELLDLADKSPIVAIKSLKVGDFQGVSLSTISKSAILVNPDIPEAKKLRCWYDSEGKGASMASVGSSLSLVSRNGIRSMYSDRVSLSHITSNPSLGDDKPAFFSVRAYISFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKTDEECRLRYILVVKVSDASGEAYVSVFNEEAEKIVGCSADELDNLKSQEGEDSPFQQKLKQVTWVPHLMRVSVSQHEYMNEKRQRITARSVAPVDFAAESRFLLEEISKMKTSQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01144 624 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Bva06g01144 624 Gene3D - 176 285 IPR012340 -
Bva06g01144 624 Gene3D - 290 430 IPR012340 -
Bva06g01144 624 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bva06g01144 624 Pfam Replication protein A OB domain 306 404 IPR031657 -
Bva06g01144 624 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 618 - -
Bva06g01144 624 Gene3D - 432 620 IPR012340 -
Bva06g01144 624 CDD RPA1_DBD_B 323 418 - -
Bva06g01144 624 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Bva06g01144 624 Gene3D - 4 112 IPR012340 -
Bva06g01144 624 SUPERFAMILY Nucleic acid-binding proteins 295 422 IPR012340 -
Bva06g01144 624 CDD RPA1_DBD_C 451 619 IPR013955 -
Bva06g01144 624 Pfam OB-fold nucleic acid binding domain 190 276 IPR004365 GO:0003676
Bva06g01144 624 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bva06g01144 624 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
Bva06g01144 624 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva06g01144 624 CDD RPA1_DBD_A 179 282 - -
Bva06g01144 624 PANTHER REPLICATION FACTOR A 1, RFA1 5 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01144 Bva-Chr6 9060704 9064476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01144 1 624 Core DNA Replication Machinery Family AT5G08020 69.169 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01144 K07466 - vvi:100255412 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01144 06 9060704 9064476 Bva06g01144 06 9060704 9064476 ECH