Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01134 ATGTATAATCAGGTGAATCATGGTCCTCATTTTGGTCAGGGTCCTCATACGCCCATGCCGCCTGCTGTTCAACAATATCCCCAAGCTCCAACTCCACATATTCAGCAAGGTCATCCAGCAGCACCAGTCCAGCATATGCCTGCTGCCCAGCCTCACAGTGGTCTGCCAGCTCCTCATGTCTATTTACATGGACCTCCTGCGACATCTTCTACAGTACCTCAGAATTCTTCTGTTCAAGTTCCTCCTGGTGTGGGGCAAAAGAATGCTCAATCTTACGTCATTCCTCCTCCTCTATTGCATGGGAACATCATGATGCCTCATACATTCTCTAGTACTGGACAGAATTCACAGCATTCTTTGAATTCGGGGGTCCAGAATCATCACATTCCTCTGCCAGGACCACCTCCAGCCATTGGTCATACTCACCAGGAAGCATCTTGGGTTCCAGCACCaccacctcctcctcctccttcctcttcttcacAAGGACAGAGTTTGTATAGACCTCCTTTTCTTCCTTGCCCACCACTGCACGGTGATGGGCAGAGCCTTCTGCATGGCCCCCCGCCCCTACTTCCCCTTACCTCTACATCGGGTGTCCTTGCTCCCACTCCTCATGGTTATTCAGCTGCTGGGAGTTGTGAATTAGGTTCCATAACTGCCCTACCTCTTGTTTCACCTTCTCCACCATCTCTTGCCACTTCTgatcttcctcctcctccatcTCAGCCAACAGAAACAAACACTGTTCAGAGAATAAAAACATTATGTCAGCTTATTGCCGAGAATGGTCCTCATTTTGAAGATAAGACTCGCCAAGTTGAATCTGGGAATCCTgattatgcatttttatttggaGGTGACCCAGGATCTGAAGCAGCTATTTCCCACGAGTACTTCCTATGGATGAAGAAGAAGTGTATTTTGGAACATAGATGGCATGATAGGAAAAGTGAATCACAGTTAAGGCCTCTGGCAGTTGATTCTTCAAGGCCACAAGGTGCTCTGAACTTTGCAAGGGAGCATAATTTAGCTTCTGATTCTGACATGGAAATGGAAGATGACATCACACTCTCTGACAAGGATCAGGGGTTGAATAATACACTTGAAGGCCTAAATCAGCAGCATTACCGGGTTGATAAAGAGTTTAGTACAAATGAACAGATACATCAGCTGCAGAATTCAACAGAAAATGATCCTATTAAGGACATCTCATCCAGGGAGGTGTCAGGCCTTGGATCCTTGGAAATGAGCAAACAAAATGAAGGATTATCTGATTCTGAGCACATAAAATATGGAAGACCAGTCGCCAAGGTTCATAGCCCAGTGAATGATTCAACTGAAGTGGCTGAATTCCCCCATGGCGCTGTTTCTGAGAAATCTGCAGCTCCTCTAGCTGAAACGATGAACCTGGCTGAACATGGTGTTTGTAATCCTGACAGAGATTCTGGTCAACCCATAAGGAGTGGCAGCCCAATAAGACTTCTTCAAGGTTATGCTTCTGATGACACTTCAGATAATGAAGATGGAACTTGCTTTTCAGATGTTAATGTCTCGACAGATATTGGATCTAGGAATCCCTTCAGGGCTCAAAAGGAGTTGGGGCTACTCTCTAAAGTATCTCCAAATCTAGTAGAAGAGGTTAAGGGCACCCATACAAGATCTGTATCAAGTGAGACCGCAGATGGATGCCTTCAACATAACCTTGAAAATCATGTGTCtgttaatttttctgtttcagTTGAAGCTTTACAGGGAAAAGATGGCTTAAGCCGTGCTGGCACTGAGAGTGGTGGTAAAGGCTATAGTGTTCAACAGGAAGATGGGAAGGAAACCTCGAAGTTTGAATCAACTCCTTTCAAAGTAGATGAGTTTGGGAGATTTGTCAGAGAAGGTGCTGCAGATAGTGACTCCGATGATTCTCACTATCGTCGGACtaggaagaaaaatagaaggcGCAGAAGTAGTAGTCGTAGCCGATCACCTCTGGATAGGAGAAgcaggaggaggaggaggaggagccCTTGGAGGAGAAAGGATAGGAGAAGCCGTTCTCGCAGCTGGTCCCCTCGAAAACGAAGAAGCAGGAGCAGGTCTCCAATCTTAAGACGTTCAGGGGAATTCTATGGTGACAATATGAAAAGGGACAGGGGTGAATGCCATAACTTCCTTCAAGGGAGGTGTAATCGTGGATCATCTTGTCGGTATATGCACCATGAATATGGCACAATTTCCAGTTCTAGGCACCATAGAAATAAACATGATCTGGAAGtttcttcttcaaaaaatTCTAGGAATCATGAAGGTGTGAAGAATATTTCTGTGGAATTGTCAGGTCATGAGCGCAATAGAGTTAGGAGTCAGGATGTGCAACTTTGTCAGAATGTAAGTGGGTCTTCTAATAGCCAGGaaataaaacagagaaaagaaggTTCTGGCAGGAATGATGTGGCGTCAACTACCTCCCATCATGATGGTCAATTGGTTGATACTAttccaaataaatttgaaattgaaagttcTAGAGAGGTTGCTCATAAAATGCAGGAAATCATAGAGGAACCTAATACTGTCATCCATGGTATAGAGAGCTTTCATAAAGCAGTGGATTCTAACCAGCAACTATTGGCTGATGGTTTTCCGTCCCAAGCTCTAAGCAGTGGTGATGCCCTGAAACTGCCTGCTGGTGCTCCTCAAAATGTCATTCCCTCAGAAAAAGGTTCATCTTCTCAGCAATTTCAGTCAAATGTTTCTTTTGGAGCGTTAGTGCAGTCTGATCACCCATCTCAGCGTATAAATGAGCCCTTTGTGTCTGAATCATTACTTGATAATAGATCAATGACTTCTGGTAGTATGGTTTCTAGTATTGAACCTTTTCCATATATGTTACCATCAACTCGGCCACAGTCAGCCACTAGTTCTGTTGGTCAATGGCTCTCATCAGAACATCTTCCCTTGAACTCTCAGACTTCTAAGGAGTTATCTTCATATGGTGCTTCTGCAAGGGACTTGCCACCTAATTCTTACCAGCTGcctccacctccacctccacctcTTTCACATTCACAAGGTGAAAATACTAAGCATATGCCGCAAATGTCAAGAGATTATGGTATGGTGCAACAAAATGCATTCTTTCCTTACCAATCCACTACCAGAGAAAGTTTTCAAGCTTACCCAGCTCTCTTACATGCCCAGAATTCCCACTTCTCTGCACAAACAAGCAGCTCTTGGCCAATCTTGCCACCACCACCTTCACAAGCGGTATATGGTTCCAATTACAGTGCACCACTTGCTACCTCTCATGTTTCTTCAGAATTTAATCAGAGTCAATTGCATTCAAGGACTGACCTTGTCTCTCAGACTTTGGCCAGGCCTGGGTTGCCTTCTCACTCTCAGGGTCCTGAGTATCAGGATCAAGCACACCCTTCAATTTTGGAGCAGTCACGATCTCTCATGCTTACAAAAGCTATGACATCAAAGCCATTGTCACAGGAAAATCCAACAAATCATTCTTTTGCAGGTCCTAATCTTGGTAGGGAAGACCATTTTAAGCAACTTGCAGTGCAGGATTCACAATTTTCAAGCTCCTCATCGTTTGGTGGCTTGCACAATCAACCTAAGCACTTCTCTTGGGAACCTGATGCAAACAGACTGCACCCTTCTTCAGGGGACAGGTTGCCTCAAGAACATATTAAGACATCTTCCCACGTCCATCTGTCTTCACAGAAGCAACAACCAGTTCATGGTCTTCAGTGTTCTGCATCTGATGGTAATTTGGATGTGCCTGGGGATACTTTTAATGTATCCAGATATCCACCGGATGTTATGGATAGCATTCATTCAGCTTCTCTTCCAGATTTTGGGGGATCAAGGATTTCTGCTCACTATAACCCTTATGCATCCACCTTTGAGCGGCCACTCAGTTCCAAATTCGGTACAAATATTTTCTGCAAAGACAACGACATAATTCATGGCAATAATTATGGTTCTTCTTCCAGTTTGAACCATACTCGTACAGATGGGCAAGATCTTTCTGGTGTTGGGTTGAGACAGACAGCTTCCTTACCAAAATCTGCTAGAACCATTGAGCAGACTTTACCTAGGTCTGGTGGTGACCAATATGATCCACTTTTTGACAGTATTGAACCATCTTCCACTTCTCTCAAGAAATTTGATCTCAATCTGAAGCAGGAAGCTACAGGTGAATCTAACATCAGTATAAGGCCCAAAAGTTCTTACAAGTCTTTTGATGCAGAAGAGAACAAACATGGGGAGATTGGTGCAGTTGCGTCTACCACCTCACAGAACAATGATGAATATGGTGAGACAGCAGATGCAGAAGTTGGTGTTGTTGAAAATGAGAGCCCAAGCAATCCTATGGATGATGCGAAGACGAACTCGGGCGATATTGAGATTGATCAAATTAAGTCTCcagggaaaagaaagaagaacaagGATTCCAGATCAATGAAACTATTCAAAGTTTCAATTGCAAACTTTGTAAAGGAGGTTTTGAAGCCATCATGGCGGCAGGGTAACATGAGTAAGGTGGCTTTTAAAACCATTGTCAAAAAGACGGTGGATAAGGTGTCAGGAGCCATGAAGGGCCACCATGTACCCAAGTCTCAGGCAAAGATAAATCAGTACATTGACTCATCACAGCGcaagttgactaaacttgtGATGGGCTATGTCGACAAGTATGTCAAGGAATTATCCTCTGCCAGTTCAAGGTTTACAAGATGCTGTTGTGATGTGGCAGTGGTTCATCAGCATTCCACTCGGCAGAATTTTGTGACTCAACCACAAACGTATCAGAGAGGCTCTGCACGAGAACGTGAGGTTTACTATCCTCGCATTGTTGAGGATTTGGCCGCATTATCAACAACCCGTCATCACGGGGGCCCGGAGGTGATATTCGGGTTTACCTTGAAGGGTTGGCTTCCGCTGAGAATGTTCAACAGGTCTGCTGCTGATTATTCCTGTAAAGTTACCGTTGAAGCCAAGCCAGACAACTTTGATACCACATATTCTACGATGATCAATTCCCCCTTCAGCGTAGTGCATGCCAATGCCATGTTCTTTTCGTCTTA 5096 0.4225 MYNQVNHGPHFGQGPHTPMPPAVQQYPQAPTPHIQQGHPAAPVQHMPAAQPHSGLPAPHVYLHGPPATSSTVPQNSSVQVPPGVGQKNAQSYVIPPPLLHGNIMMPHTFSSTGQNSQHSLNSGVQNHHIPLPGPPPAIGHTHQEASWVPAPPPPPPPSSSSQGQSLYRPPFLPCPPLHGDGQSLLHGPPPLLPLTSTSGVLAPTPHGYSAAGSCELGSITALPLVSPSPPSLATSDLPPPPSQPTETNTVQRIKTLCQLIAENGPHFEDKTRQVESGNPDYAFLFGGDPGSEAAISHEYFLWMKKKCILEHRWHDRKSESQLRPLAVDSSRPQGALNFAREHNLASDSDMEMEDDITLSDKDQGLNNTLEGLNQQHYRVDKEFSTNEQIHQLQNSTENDPIKDISSREVSGLGSLEMSKQNEGLSDSEHIKYGRPVAKVHSPVNDSTEVAEFPHGAVSEKSAAPLAETMNLAEHGVCNPDRDSGQPIRSGSPIRLLQGYASDDTSDNEDGTCFSDVNVSTDIGSRNPFRAQKELGLLSKVSPNLVEEVKGTHTRSVSSETADGCLQHNLENHVSVNFSVSVEALQGKDGLSRAGTESGGKGYSVQQEDGKETSKFESTPFKVDEFGRFVREGAADSDSDDSHYRRTRKKNRRRRSSSRSRSPLDRRSRRRRRRSPWRRKDRRSRSRSWSPRKRRSRSRSPILRRSGEFYGDNMKRDRGECHNFLQGRCNRGSSCRYMHHEYGTISSSRHHRNKHDLEVSSSKNSRNHEGVKNISVELSGHERNRVRSQDVQLCQNVSGSSNSQEIKQRKEGSGRNDVASTTSHHDGQLVDTIPNKFEIESSREVAHKMQEIIEEPNTVIHGIESFHKAVDSNQQLLADGFPSQALSSGDALKLPAGAPQNVIPSEKGSSSQQFQSNVSFGALVQSDHPSQRINEPFVSESLLDNRSMTSGSMVSSIEPFPYMLPSTRPQSATSSVGQWLSSEHLPLNSQTSKELSSYGASARDLPPNSYQLPPPPPPPLSHSQGENTKHMPQMSRDYGMVQQNAFFPYQSTTRESFQAYPALLHAQNSHFSAQTSSSWPILPPPPSQAVYGSNYSAPLATSHVSSEFNQSQLHSRTDLVSQTLARPGLPSHSQGPEYQDQAHPSILEQSRSLMLTKAMTSKPLSQENPTNHSFAGPNLGREDHFKQLAVQDSQFSSSSSFGGLHNQPKHFSWEPDANRLHPSSGDRLPQEHIKTSSHVHLSSQKQQPVHGLQCSASDGNLDVPGDTFNVSRYPPDVMDSIHSASLPDFGGSRISAHYNPYASTFERPLSSKFGTNIFCKDNDIIHGNNYGSSSSLNHTRTDGQDLSGVGLRQTASLPKSARTIEQTLPRSGGDQYDPLFDSIEPSSTSLKKFDLNLKQEATGESNISIRPKSSYKSFDAEENKHGEIGAVASTTSQNNDEYGETADAEVGVVENESPSNPMDDAKTNSGDIEIDQIKSPGKRKKNKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHHVPKSQAKINQYIDSSQRKLTKLVMGYVDKYVKELSSASSRFTRCCCDVAVVHQHSTRQNFVTQPQTCHHGGPEVIFGFTLKGWLPLRMFNRSAADYSCKVTVEAKPDNFDTTYSTMINSPFSVVHANAMFFSS 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01134 1672 Pfam Surp module 253 302 IPR000061 GO:0003723|GO:0006396
Bva06g01134 1672 MobiDBLite consensus disorder prediction 110 191 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 987 1031 - -
Bva06g01134 1672 PANTHER EXPRESSED PROTEIN 1 1571 - -
Bva06g01134 1672 SMART c3hfinal6 716 740 IPR000571 GO:0046872
Bva06g01134 1672 ProSiteProfiles Zinc finger C3H1-type profile. 714 741 IPR000571 GO:0046872
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1 92 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 588 616 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 633 716 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 987 1003 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1234 1256 - -
Bva06g01134 1672 Gene3D Surp module 249 308 IPR035967 GO:0003723|GO:0006396
Bva06g01134 1672 MobiDBLite consensus disorder prediction 110 126 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 788 806 - -
Bva06g01134 1672 ProSiteProfiles SURP motif repeat profile. 252 300 IPR000061 GO:0003723|GO:0006396
Bva06g01134 1672 MobiDBLite consensus disorder prediction 744 764 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 645 699 - -
Bva06g01134 1672 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 719 739 IPR000571 GO:0046872
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1195 1256 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1007 1021 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 227 248 - -
Bva06g01134 1672 SUPERFAMILY Surp module (SWAP domain) 233 304 IPR035967 GO:0003723|GO:0006396
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1467 1481 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 67 86 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 744 826 - -
Bva06g01134 1672 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1571 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1452 1489 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1160 1179 - -
Bva06g01134 1672 MobiDBLite consensus disorder prediction 1160 1174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01134 Bva-Chr6 9005001 9014237 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g01134 Surp 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01134 - - gmx:100807768 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01134 06 9005001 9014237 Bva06g01134 06 9005001 9014237 ECH