Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01112 ATGTCCTGCGGCTCAGACACGGCTTCGACTTCCTTTTCCTCGAACAAACGAATGAAAATTCAGAGTTCAGCCGATGTATCAACATCTAAAAGCGACGAAGGTGACGATAAGCTGTGCGGAATTTGCTATTCCGATAATGGGGTATCAATCAGAGGAGAAATTGATTGCTGCAACCACTACTTTTGCTTCGTGTGCATCATGGAATGGGCTAAGCATGAGTCTCGATGCCCAATCTGTAGACAGAGATTCTCCACCATTCGTAGACCGCCCAAGCCAGGAGTATTTCCTTCCTTTAGGGTCGTTAAGGTTCCTGTTCGCGACCAGGTTTACCATCATAATGGAAATGTGACAACTGGTCCTGTTGACCCTTACGCACAAGTGCAGTGTTGTGTGTGTCATGGTAATGGAGATGATAGTCTGCTATTACTTTGTGATCTTTGTGATACCGGTTCTCACACATACTGTGTTGGCCTGGGCTATACTGTACCTGAAGGTGATTGGTTTTGTCATGACTGTACTGTTTCCTGGGCGACCTCCAGCGACAATGGTGAAACAGACAAAAGCAATGTGATGCCCAGGGCTGAGACCAGTGTGAGCATGTTTGATATTCTGAAAGAACCAAACAGGCAAGTGGTTACTAGACCAAGATCACCTCCTTCACAACAAAACCAGTCTTTTAGTCCTGAGATGGGCGCAAGGACATTGCATCGGTGTCGCTATGTGCGCCGTAGCATACAAGCATTGCGTGAAAATTGGAATGTTATAAGAAATGGTTCATTAGGATTCTGTAGTACTTCTAGATCTGATGAGCTAATTAGTCAAAGGCAAAATGGCAAATCAAATCCACTGCATTCTATGCCTTCCGTAAGCCAGCAACATTCCCCAATCCAACATGGTCCTTCTAGCAGCAAACTGCATGACGAAGGCTTGAAAGATGTTGATAAGGCCTGGAAAATGATGAACAGGGCAAGGATGATGCATCGAACCCAGCTAGGAACCAGTGGCgtcaagaaaattttggaaaatcgCCGGCCTTCAAAGTTGCAAGTGCAGGAGCAGAGAAGAGTCAATACTAAAAAGGTGATAAAACATGCGAGGGACCATTCAGCTCGTCAATTGCCAGAATATTGTGAACTTCCATTTTCCGGAAGGGTTCATTCTAGTAGTAGTATTCAGAGTGTTTCCTGTCATGAAAGTGGAGATAAAAGTTTTACCAAGGAGCAAAGCACGTTTAATTCCAGGGCAAGTTTCGTAGGTTCAGCTCCTTCTCGTGGAAAGTGTGTGGAGACATCTTCATCTGGCAGGGAGGTGGGgaataaatcaaatagaaatCAAAGATTGGATGAAATTTGTAAGGGTGGAAAGACAGGTAAAACCGATGATGCGAAAAACGAGATAAAGTCTCTTGTCAAGCTCAATCTGAAGGTTCTAAGCCGTGATAAAAAGTTAGGTGTTGACATGTTTAAGGAAGTTGGAAGGTGTGCAACCCACACCATTTTGTCTGCTTGCATATCAGAGCAGCAAAAGTCTGATATATTCTCCTCAAGCTCAGTGCTCAAATGCAATCACAGCGAAGGTGATGTTCAGCCGTTTCATAAATCGACCTTGATGCCTAATTCTTGCAGACAGTGCTTTTATGCTTTTGTAAACAGTGTTGTCAACTCCATTATGTTGGACAAAGTGGGTTCCGCCAGAACATTATG 1703 0.4339 MSCGSDTASTSFSSNKRMKIQSSADVSTSKSDEGDDKLCGICYSDNGVSIRGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSTIRRPPKPGVFPSFRVVKVPVRDQVYHHNGNVTTGPVDPYAQVQCCVCHGNGDDSLLLLCDLCDTGSHTYCVGLGYTVPEGDWFCHDCTVSWATSSDNGETDKSNVMPRAETSVSMFDILKEPNRQVVTRPRSPPSQQNQSFSPEMGARTLHRCRYVRRSIQALRENWNVIRNGSLGFCSTSRSDELISQRQNGKSNPLHSMPSVSQQHSPIQHGPSSSKLHDEGLKDVDKAWKMMNRARMMHRTQLGTSGVKKILENRRPSKLQVQEQRRVNTKKVIKHARDHSARQLPEYCELPFSGRVHSSSSIQSVSCHESGDKSFTKEQSTFNSRASFVGSAPSRGKCVETSSSGREVGNKSNRNQRLDEICKGGKTGKTDDAKNEIKSLVKLNLKVLSRDKKLGVDMFKEVGRCATHTILSACISEQQKSDIFSSSSVLKCNHSEGDVQPFHKSTLMPNSCRQCFYAFVNSVVNSIMLDKVGSARTL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01112 567 MobiDBLite consensus disorder prediction 441 459 - -
Bva06g01112 567 MobiDBLite consensus disorder prediction 213 229 - -
Bva06g01112 567 Pfam PHD-finger 129 174 IPR019787 -
Bva06g01112 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 197 IPR013083 -
Bva06g01112 567 ProSiteProfiles Zinc finger RING-type profile. 39 80 IPR001841 -
Bva06g01112 567 Pfam Ring finger domain 39 80 IPR001841 -
Bva06g01112 567 SMART ring_2 39 79 IPR001841 -
Bva06g01112 567 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Bva06g01112 567 SUPERFAMILY RING/U-box 20 95 - -
Bva06g01112 567 MobiDBLite consensus disorder prediction 415 459 - -
Bva06g01112 567 MobiDBLite consensus disorder prediction 209 229 - -
Bva06g01112 567 PANTHER F18C1.6 PROTEIN 9 562 - -
Bva06g01112 567 MobiDBLite consensus disorder prediction 348 367 - -
Bva06g01112 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 88 IPR013083 -
Bva06g01112 567 MobiDBLite consensus disorder prediction 415 440 - -
Bva06g01112 567 MobiDBLite consensus disorder prediction 271 309 - -
Bva06g01112 567 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 9 562 - -
Bva06g01112 567 SUPERFAMILY FYVE/PHD zinc finger 126 174 IPR011011 -
Bva06g01112 567 ProSiteProfiles Zinc finger PHD-type profile. 126 175 IPR019787 -
Bva06g01112 567 MobiDBLite consensus disorder prediction 271 301 - -
Bva06g01112 567 SMART PHD_3 128 173 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01112 Bva-Chr6 8866864 8869563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01112 115 175 C2H2 Transcription Factor Family AT3G01460 37.097 4.14e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva06g01112 PHD 2.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01112 - - gmx:100808541 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01112 06 8866864 8869563 Bva06g01112 06 8866864 8869563 ECH