Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01109 ATGACATCGTCAATGGCAGATGTCGCCTACCTTCGCCTCCAGGAACCCGATGACGATCCTCATCTTACTGAGCAAACCCTAATCCGGGATTCCATCCCTTACTGGTCCCATCAAGATATCGATTTCTATTCTTCTGATACAGATTTCCCACCGTCTGATGCCTCTCTCCATCCCCACTTATCCTCTTGCGATGCTCCCTTGTCTGAACAATTTGAATCAACAATCTGTATTCAAGGTGAGGATGACCTCTCGGACCCTGGTTCGATTTCAAACGCTGATCTTTTAGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTCTTTCAACAGCGTGTTGAGCAATCGCAGGTCATGGGTCATAGCGATTTGGTATCGGATAATGAATCGGGATTTGGTGTTATTGAGGGACACTGTGATGTAGGTGTTGATGGTTTGGGGCTGGATTTGGGGTTAGGTTTAGCATTTGGTGTTGATAGGGATTGTGATGACAATTGTGATTTCATGGTTGAAAGTTATGGTTCtgttggtggtggtggagacGATGATGATATCTTCATCGGGAGGAGGGTTTCTAGATCTGAACCCGGTGAGGCACCGTCGACGACGGCAAGCGGGATGCAACCTTTTGAGAACTGTGTCCGGCTTGTGGGTTTTGGATCCGATTCGGATGAGGAGGAGAACGGGGTTCTGGGTCTCTGTTTGCATTCGGAAGATGAGTATAATGGCCATAATGAGAACGACGATGCTGCGAGCATCCCTCTTTGTTGGGATTCACTCCAATTGGAGGATAACAGGGAGAGTAATGAAGATTTTGAGTGGGAGGAGGTGGATGGACGAGTTGACGAGAGAGAAGTTTTGAGCATGTTCACGGCTGAAGATGATAGGTCTGTTTCTGTTTCAGTGTCGCCAGTAATTGGGCTTGAAGAAGAAGTAGGTGTTGTGAGGGTTGGAGGCATGGAAAATTTGGAGTGGGAAGTTTTGTTGAATGCCAATAATTTGGACACGAACCCTGATTTGGACCATGATGCAGAACCTTATTTTGGTGATCATGATGATTATATTTACACTGCAGAGTACGAAATGATGTTTGGGCAATTTACTGAGAATGAGAATCCCTTAATGGGTCGGCCTCCAGCATCCCAATATGTTGTTCAGCATCTTCCATCAGTTGTTATCACCAAGGAAGATGTGGAGAACAATAATGCACTTTGCGCAGTTTGTAAGGATGAGTTCAATGTTGGGGAACAAGCAAAACAGTTGCCATGTTCACATCGTTACCATGGTGACTGCATTATACCTTGGCTGGGTATTAGAAATACTTGTCCTGTCTGTCGTTATGAGTTTCCAACAGATGATGCTGATTATGAACGTAGGAGGAACCAAAGATCCGGCCGCAGCTTGTG 1403 0.449 MTSSMADVAYLRLQEPDDDPHLTEQTLIRDSIPYWSHQDIDFYSSDTDFPPSDASLHPHLSSCDAPLSEQFESTICIQGEDDLSDPGSISNADLLDRENQVNFVMDLFQQRVEQSQVMGHSDLVSDNESGFGVIEGHCDVGVDGLGLDLGLGLAFGVDRDCDDNCDFMVESYGSVGGGGDDDDIFIGRRVSRSEPGEAPSTTASGMQPFENCVRLVGFGSDSDEEENGVLGLCLHSEDEYNGHNENDDAASIPLCWDSLQLEDNRESNEDFEWEEVDGRVDEREVLSMFTAEDDRSVSVSVSPVIGLEEEVGVVRVGGMENLEWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFTENENPLMGRPPASQYVVQHLPSVVITKEDVENNNALCAVCKDEFNVGEQAKQLPCSHRYHGDCIIPWLGIRNTCPVCRYEFPTDDADYERRRNQRSGRSL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01109 467 CDD RING-H2_RNF126_like 404 445 - -
Bva06g01109 467 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 95 463 - -
Bva06g01109 467 SMART ring_2 404 444 IPR001841 -
Bva06g01109 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 451 IPR013083 -
Bva06g01109 467 PANTHER - 95 463 - -
Bva06g01109 467 Pfam Ring finger domain 404 445 IPR001841 -
Bva06g01109 467 ProSiteProfiles Zinc finger RING-type profile. 404 445 IPR001841 -
Bva06g01109 467 SUPERFAMILY RING/U-box 384 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01109 Bva-Chr6 8855105 8856817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01109 5 451 C3H Transcription Factor Family AT5G60820 36.025 9.36e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01109 - - adu:107469048 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01109 06 8855105 8856817 Bva06g01109 06 8855105 8856817 ECH