Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01090 ATGCCATTATCTCTATATCATTGTTTCATCAAAAAGCGTTCAGGAAGATGGGTTGCTGAGATCAAGTACTCTACGCAGAAGCTGAGGCTGTGGTTGGGAACTTTTGACAGAGCAGAAGAGGCTGCGCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGTAAAAATGCCAAAACAAACTTTCCAAGTACTGGGGTTGGCTGCCCCCGCGAGGAAAATGGCAGTTTTTTGGGAAAGAACCCTAGAGCTTATCAGCTTCTTAAGCATGCAGTTATGAAGAACCATGCACTATTTGCATCTGTTTATTCCAAAACCATGCCATGGAAAAACCAGATCATAGGTGATGAGTTCGACGTGCTTGTTGAAGAAACTATAGTTTGTTCTTCTAGTTCTGAGAAGTGTTCAGGCTGCAGTGGACTTTCATTTGGTAGTTCTAAGGTTTATTCTTCTATCGTTGTAGCTCCTTCTTTCAGTTCTTCCCTGTGCCAAACAGGAGGTGATCATGGAGAAACcctttg 518 0.4286 MPLSLYHCFIKKRSGRWVAEIKYSTQKLRLWLGTFDRAEEAALAYDCAARLLRGKNAKTNFPSTGVGCPREENGSFLGKNPRAYQLLKHAVMKNHALFASVYSKTMPWKNQIIGDEFDVLVEETIVCSSSSEKCSGCSGLSFGSSKVYSSIVVAPSFSSSLCQTGGDHGETL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01090 172 Gene3D AP2/ERF domain 6 63 IPR036955 GO:0003700|GO:0006355
Bva06g01090 172 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 167 - -
Bva06g01090 172 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Bva06g01090 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 13 167 - -
Bva06g01090 172 SUPERFAMILY DNA-binding domain 11 62 IPR016177 GO:0003677
Bva06g01090 172 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
Bva06g01090 172 CDD AP2 11 62 IPR001471 GO:0003700|GO:0006355
Bva06g01090 172 Pfam AP2 domain 11 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01090 Bva-Chr6 8775964 8776709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01090 11 61 AP2-EREBP Transcription Factor Family AT5G19790 68.627 3.42e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g01090 AP2 3.5e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01090 06 8775964 8776709 Bva06g01090 06 8775964 8776709 ECH