Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01082 ATGGTCGAACCAGAAGAAAATCATCAAATCTCGCCTGAGGGCGAAACCGAGAATAAGAAGcgcaaaagaaagagagtaCGAAAAACTGCAACTGCCGAGCAATCTGAGCCCCATGAGGCTGACGAGCGTGCAGTAGAAGAAAATGGTGAAGCAGAAGAGAATGGTCATTCGGAAGGAGAACGTatggaggaaaataaaaaggatcagaagaagaagaagaagaagcataaGAAGGTGAAGAGTGGGGAAAGTGGGGAAGGAGAAAGTAAAGTGGAAAGGGGCAGTGATGACGATGATGAGAACcaagaggaggaggaggaacaGCGAAAGGTGAAGAAGGGGGAGTCTGGAATTATGAGCTCTGTTTCATTTGCTTCTGAAGAACTGAAATTGTCCGAGCCTACTTTAAGGGCTATTAAAGAGATGGGATTCCAGCACATGACTcagATTCAAGCGAGAGCAATCCCACCACTTCTAATGGGAAAAGATGTTCTCGGTGCTGCAAGGACAGGTTCTGGAAAAACACTGGCTTTTCTAATTCCAGCTGTTGAGCTGTTATACCACATTCAATTTACTCCCCGCAATGGAGCAGGTGTCATTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTGGCAAAAGACCTGCTCAAGTACCACTCACAAACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAGAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTTTTAGTAGCAACTCCTGGTCGTCTTCTTGATCATCTCCAAAATACTAAgggatttatatataaaaacttaaagTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAACAGATTATTAAGATCTTACCAAAGAATAGGCAAACGGCTTTATTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAAAACCTGTATATATTGGCGTGGATGATGACAGAACCAAGGTTACAAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCCAGTGACAAGAGATTTGTTGTTCTCTATTCTTTCTTGAAGAGATTTCACTCAAAAAAAGTGATggtctttttctcttcatgcAACTCTGTAAAATTCCATGCAGAAATTCTCAATTACATACAGGTGAAATGTTTTGATATTCatggaaaacaaaagcaaCAGAGACGGACAAATACTTTCTTCGAATTCTGCAAAGCAGAAAAAGGAATCCTGCTCTGTACTGATGTTGCTGCTCGTGGGCTTGATATTCCTGCTGtgGATTGGATCGTGCAGTATGATCCCCCTGATGACCCCAAGGAATATATACATAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAGGGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGgCTGCAAAGGTTCCTGTGAAAGAGTACGCATATGATGAAAAGAAGCTGGCAAATGTGAAGTCTCAGCTGGAGAAGTTGGTGGGAAACAATTACAATTTGAACCAGTCGGCTAAAGAAGCTTACAGATCATATATACTTGCTTATAATTCACACTCTATGAAGGATATATTTAATGTTCACCACCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAGGtgaatataaacataaacagCACTGCTTCAAAGATTAGGAAGAAAATGCGTAAAATTGAGGGAAAAAGACATGGATTTAGCGAGAGCAATCCTTATGGAAAGCCAAGTGAGGATGATAAGCGGCAATTTGTGAGGCATTA 1835 0.3831 MVEPEENHQISPEGETENKKRKRKRVRKTATAEQSEPHEADERAVEENGEAEENGHSEGERMEENKKDQKKKKKKHKKVKSGESGEGESKVERGSDDDDENQEEEEEQRKVKKGESGIMSSVSFASEELKLSEPTLRAIKEMGFQHMTQIQARAIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLYHIQFTPRNGAGVIVICPTRELAIQTHAVAKDLLKYHSQTLALVIGGSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTKPVYIGVDDDRTKVTNEGLQQGYVVVPSDKRFVVLYSFLKRFHSKKVMVFFSSCNSVKFHAEILNYIQVKCFDIHGKQKQQRRTNTFFEFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGGRGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKLANVKSQLEKLVGNNYNLNQSAKEAYRSYILAYNSHSMKDIFNVHHLDLQAVAASFCFSNPPKVNININSTASKIRKKMRKIEGKRHGFSESNPYGKPSEDDKRQFVRH 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01082 611 MobiDBLite consensus disorder prediction 80 96 - -
Bva06g01082 611 Pfam Domain of unknown function (DUF4217) 507 566 IPR025313 -
Bva06g01082 611 MobiDBLite consensus disorder prediction 1 116 - -
Bva06g01082 611 MobiDBLite consensus disorder prediction 1 20 - -
Bva06g01082 611 Gene3D - 98 337 IPR027417 -
Bva06g01082 611 SMART ultradead3 143 348 IPR014001 -
Bva06g01082 611 MobiDBLite consensus disorder prediction 583 611 - -
Bva06g01082 611 MobiDBLite consensus disorder prediction 586 611 - -
Bva06g01082 611 SMART helicmild6 384 465 IPR001650 -
Bva06g01082 611 CDD DEADc_DDX18 135 332 IPR044773 GO:0003724|GO:0005524
Bva06g01082 611 Gene3D - 341 588 IPR027417 -
Bva06g01082 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 514 IPR001650 -
Bva06g01082 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 330 IPR014001 -
Bva06g01082 611 SMART DUF4217_3 505 568 IPR025313 -
Bva06g01082 611 CDD SF2_C_DEAD 345 475 - -
Bva06g01082 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 486 IPR027417 -
Bva06g01082 611 Pfam Helicase conserved C-terminal domain 360 464 IPR001650 -
Bva06g01082 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 59 601 - -
Bva06g01082 611 PANTHER RNA HELICASE 59 601 - -
Bva06g01082 611 MobiDBLite consensus disorder prediction 29 67 - -
Bva06g01082 611 Pfam DEAD/DEAH box helicase 148 319 IPR011545 GO:0003676|GO:0005524
Bva06g01082 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Bva06g01082 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01082 Bva-Chr6 8726136 8731761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01082 106 484 Eukaryotic Initiation Factors Gene Family AT3G19760 28.158 1.23e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01082 K13179 - sind:105164333 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01082 06 8726136 8731761 Bva06g01082 06 8726136 8731761 ECH