Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01071 ATGTTTCCCTCAAACTGTTCCCGCAACGGTAATGACCCAATCTCCTATTCTGACCAAGCATTTTGCTGCAGGCCTATCTTCAATGACAGCAACCCATATTCCAAACGAGAAAATGTTCATGCCCCTACTCCTCCTCCTTTATCCTTTCTCCACTTCCCGTCCCCCTTTGAAGACGATGAAATTTTTCTCCAACAACATCAAGACCTCTTGCTTAACCATCAATCTCTAGCTGAGACTGTTGTTAGCATGGACGTTTCAACAAAGATTCCTAGTAAGGGACATCGCATGAGTATGGAGCAGAtcccaagaaaaaaatcttgCAAGAGAGATCGACACAGCAAGATTAACACAGCTCGGGGTCTGAGGGATCGGAGAATGAGGTTGTCCCTTGAAGTTGCTAAAAGTTTTTTTGGTCTGCAAGACATGCTAGGCTTTGACAAAGCAAGCAAAACGGTGGAGTGGTTACTCAATCAAGCAAAGGACGAAATCAAACAGCtggcaagagaaaagaatcaCCTCAGTTGTAGTAGTACTGCTGGAGTCAAGAGTGCATCTTCAACTTCCGAATGTGAAGGGGTATCTGGCTTGGATGAGGTTGCAGTCAGTGGAAATCGAGAACAAGAGGGGGAACCCTCAGTGAGGAAAAGGATTAAACTTTCTCGAAAGAGTGCGTTTCGTCCTCTTGCCAGGGAGACCAGAGAAAAGGCAAGAGAAAGGGCAAGAAAAAGGACTTTGGAAAAGATGAGGAGTCGGAGACTAGCTGATGAGTCAAAGACAAAGCAATGCAGCGACCAAAAAACCAACAGTTTGAGCCAATTAGGTTCTTGGAATCCCTTTGAAACGAGAACCGAATCTGGTACCCAGAGTCAAAACATGAATCTCTCCTTGGATGTGCTGACTGAAGCTGAAGAGCGAAGTTCTCAGGCAAAGGAGCATTTGAGGACTGTAGATGATATAACCCATGACGATTCTTTGGATATGAGCAAATGGAGCCCAACCATGATTTTTAATTCACTGACTAACTCTGGACTCCTACAAGAACATCAATTTGGAGAATTTCAGTTCCTGGGCAAACATTGGGAGGCCTACAACAATCACATCTA 1103 0.4325 MFPSNCSRNGNDPISYSDQAFCCRPIFNDSNPYSKRENVHAPTPPPLSFLHFPSPFEDDEIFLQQHQDLLLNHQSLAETVVSMDVSTKIPSKGHRMSMEQIPRKKSCKRDRHSKINTARGLRDRRMRLSLEVAKSFFGLQDMLGFDKASKTVEWLLNQAKDEIKQLAREKNHLSCSSTAGVKSASSTSECEGVSGLDEVAVSGNREQEGEPSVRKRIKLSRKSAFRPLARETREKARERARKRTLEKMRSRRLADESKTKQCSDQKTNSLSQLGSWNPFETRTESGTQSQNMNLSLDVLTEAEERSSQAKEHLRTVDDITHDDSLDMSKWSPTMIFNSLTNSGLLQEHQFGEFQFLGKHWEAYNNHI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01071 367 Coils Coil 149 176 - -
Bva06g01071 367 Pfam TCP family transcription factor 108 250 IPR017887 -
Bva06g01071 367 MobiDBLite consensus disorder prediction 263 289 - -
Bva06g01071 367 Coils Coil 228 248 - -
Bva06g01071 367 PANTHER TRANSCRIPTION FACTOR TCP18 50 338 - -
Bva06g01071 367 ProSiteProfiles TCP domain profile. 108 166 IPR017887 -
Bva06g01071 367 MobiDBLite consensus disorder prediction 220 289 - -
Bva06g01071 367 MobiDBLite consensus disorder prediction 224 262 - -
Bva06g01071 367 ProSiteProfiles R domain profile. 230 247 IPR017888 -
Bva06g01071 367 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 338 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01071 Bva-Chr6 8674253 8675540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01071 95 244 TCP Transcription Factor Family AT3G18550 43.860 5.69e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva06g01071 TCP 7.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01071 - - gmx:100803669 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01071 06 8674253 8675540 Bva05g00628 05 3114036 3115334 ECH
Bva03g01855 03 16783751 16785466 Bva06g01071 06 8674253 8675540 ECH
Bva04g00479 04 2873978 2876253 Bva06g01071 06 8674253 8675540 ECH
Bva06g01071 06 8674253 8675540 Bva06g01071 06 8674253 8675540 ECH