Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01051 ATGTCTCAGACCATCTGGGAAGCCGATAAAATGTTAGACGTGTACATCTACGATTATCTCATGAAGAGAAACTTACATGCTTCTGCAAGCACATTTCTGGCTGAAGGGAAGGTCTCGACAGATCCTGTAGCTATAGATGCACCTggtagttttctttttgaatggTGGTCTGTCTTCTGGGACATCTTTATTGCCAGGACAGATGAAAAGCACTCAGAAGCAGCAACATCTTATATTAAGAGTCAACAAATTAAGGCTCAAGAGATGCAGAAGCAACAAGAACAAGAGCATCAGAAACCAAATCAGCATCAAGAAATGCAAATGCAGCTGTTTTTGCAGAGGCATGctcagcagcagcagcaacaacaacTTAGGAGTGGGACGCAGCTAGTTAGTGGCTGTGCTAATTTAAGCAGTCCTATTGGCAGTGGTCCTCTTATGAGACAGAGCCATGCAACTGCGAGTGCCTTGGCAACAAAAATGTATGGCAACAGTTTGAAGCTTGCCCTTCATAGAGATGCCTTTAGTGATGCAACTATGAAGCAAAAGATAGGTGGTAATGTTGGTAATCTTCTGGACCCAAATCATGCCTCTTTATTGAAAGCTGCAGCAGCAACAACTGCTGTTGGACAACCTCCAGGGCAAACATTGCTTGGTTCACCTAGGGGTTTACCCAGGAACCTTCAACTAGTTCAAAATCAGAATCAGCAACTTCCGGGTTCTACACAAGACATGAAGAATGATACGAGTCCAATGATGAGCCCTCAAGCTGCTGTTCCAGAAGGATCATTGATTGGAATTCATGGTCCAAATCAAGTTAGTAGCAATTTGACTTTGAAAGGATGGCCTTTAGCTGGACTGGATCAGCTCCGCTCTGGACTTCTCCAGCAGAATACTTTGATGCAGTCCCTGCAACCCTTTAGTCAACTTTCACTACAGCAGCAACTAATGCTTCAGGCTCAGCAAAATTTAGCATCCTCATCTGTAGATGATTTGGAGAGCACGAAACTGAGAATGCTtcttaataatcaaaatatgggTCTTGGGAAAGATGGCCAGTCAAATCCTGTTGGTGATTTAGTTCCTAACATTGGAACACCAGTGCAAGTTAATTCTCCTCTATTGCCTCATCTGGACTCAAACGTGTTGCTGAAGGAACAAGTGCAACAGAACAaccagcagcagcaacaataTTTACAACATCCTCTTTCACGCCAACAGCCTCCAAATCACCAGCGACAAGACAAAATGGTTGGTTCTAGCTGCATAACAGCAGATGGTAGCATATCCACTACCTTTCAAGGAAATGATCAGgcTTCCAAAAGTCACATTGGGAGGAAGCGAAAGCAAGCATCATCTTCAGGTCCTGCTAATAGCTCTGGAACTGCAAACACCACCGGACCATCAACCAGTTCTCCGTCAACACCTTCTACGCAAACAGCAGATGTAATGGCGGTGCCACCTCTGCAGCAGaatgtttcttcttctaagtCGTTACTTATGTTTAATTCTGATAGTTTGGGCTCACTAACATCTGCACAGAATCAAACGGCAGATATGGACCGTCTAATGGATGGATCTGTGGGTGATAAAGTCCAGTCATTCTTATCTTCTGATGATGCAGACCCTAGAGATAGAGTTGTTCATTATCAAGATGTGGGTAAAGGCATTTCACTTAAGGAGATGAATCTTATTGTGGCAAGTACACATAAAATTGAGTGTTGCCACTTCTCGTCAGATGGAAAATTGCTTGCCACTGGTGGCCACGATAGAAAGGCTTCATTGTGGTGCACAGAGTCATTTGAATTGAAATCTACACTCGAAGAACACTCTCAATGTATAACTGATGTCCGATTCAGTCCAAGCATGCCACGCATAGCTACTTCCTCAGCTGACAAAACTGTGAGAATTTGGGATGCTGATAATCCTGGTTATTCACTTCGCACATTCAGTGGTCATTCTACAGCGGTAATGTCACTGGACTTTCACCCTAGTAAAGAGGACCTTATCTTCTCTTGTGATAATAATAGCGAGATAAGATACTGGAGCGTTCTGAATGGTAGTTGTGCTGGGGTTTTTAAGGGTGGTGCAAGTCACATGAGATTTCAACCTTGTTTCGGAAGGCTTCTTGCTGCTGCAGTTGATAATCTTGTCTCCATTCTTGATGTAGAAACCCTGGTTTGCAGATTTAAATTACAGGGTCATAAGAACCTTGTTCGATCTGTGTGCTGGGATTCTTCTGGTGAATATCTGTCATCTGTGAGTGATGACTCTGTTAGAGTATGGAAAATTGGATCTGGCGGCAAAGGGGAATGCATTCATGACATGAATGCCAGTGGCAACAAATTCAACACCTCCGTTTTCCATCCCTCCTATCCTTTGTTGATCATTGGCTGCTATGATACTCTTGAGCTCTGGAACTTCAGTGAGAACAAGACAACGACTCTACGTGCTCATGACAAGCTTGTATCTTCCTTGGCAGTATCAAATGCTACTGGGTTGGTAGCTTCAGCCAGTCATGACAAGCGAATTAAGTTTTGGAAGTG 2546 0.4191 MSQTIWEADKMLDVYIYDYLMKRNLHASASTFLAEGKVSTDPVAIDAPGSFLFEWWSVFWDIFIARTDEKHSEAATSYIKSQQIKAQEMQKQQEQEHQKPNQHQEMQMQLFLQRHAQQQQQQQLRSGTQLVSGCANLSSPIGSGPLMRQSHATASALATKMYGNSLKLALHRDAFSDATMKQKIGGNVGNLLDPNHASLLKAAAATTAVGQPPGQTLLGSPRGLPRNLQLVQNQNQQLPGSTQDMKNDTSPMMSPQAAVPEGSLIGIHGPNQVSSNLTLKGWPLAGLDQLRSGLLQQNTLMQSLQPFSQLSLQQQLMLQAQQNLASSSVDDLESTKLRMLLNNQNMGLGKDGQSNPVGDLVPNIGTPVQVNSPLLPHLDSNVLLKEQVQQNNQQQQQYLQHPLSRQQPPNHQRQDKMVGSSCITADGSISTTFQGNDQASKSHIGRKRKQASSSGPANSSGTANTTGPSTSSPSTPSTQTADVMAVPPLQQNVSSSKSLLMFNSDSLGSLTSAQNQTADMDRLMDGSVGDKVQSFLSSDDADPRDRVVHYQDVGKGISLKEMNLIVASTHKIECCHFSSDGKLLATGGHDRKASLWCTESFELKSTLEEHSQCITDVRFSPSMPRIATSSADKTVRIWDADNPGYSLRTFSGHSTAVMSLDFHPSKEDLIFSCDNNSEIRYWSVLNGSCAGVFKGGASHMRFQPCFGRLLAAAVDNLVSILDVETLVCRFKLQGHKNLVRSVCWDSSGEYLSSVSDDSVRVWKIGSGGKGECIHDMNASGNKFNTSVFHPSYPLLIIGCYDTLELWNFSENKTTTLRAHDKLVSSLAVSNATGLVASASHDKRIKFWK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01051 848 MobiDBLite consensus disorder prediction 236 256 - -
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 732 764 - -
Bva06g01051 848 MobiDBLite consensus disorder prediction 449 480 - -
Bva06g01051 848 Pfam WD domain, G-beta repeat 728 763 IPR001680 GO:0005515
Bva06g01051 848 Pfam WD domain, G-beta repeat 568 596 IPR001680 GO:0005515
Bva06g01051 848 Pfam WD domain, G-beta repeat 646 682 IPR001680 GO:0005515
Bva06g01051 848 Pfam WD domain, G-beta repeat 811 848 IPR001680 GO:0005515
Bva06g01051 848 Pfam WD domain, G-beta repeat 604 639 IPR001680 GO:0005515
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 816 848 IPR001680 GO:0005515
Bva06g01051 848 SMART Lish 8 40 IPR006594 GO:0005515
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 684 - -
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 606 IPR001680 GO:0005515
Bva06g01051 848 Gene3D - 697 848 IPR015943 GO:0005515
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 642 - -
Bva06g01051 848 SMART WD40_4 769 807 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 558 597 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 643 683 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 809 848 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 600 639 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 725 763 IPR001680 GO:0005515
Bva06g01051 848 SMART WD40_4 686 722 IPR001680 GO:0005515
Bva06g01051 848 SUPERFAMILY WD40 repeat-like 559 848 IPR036322 GO:0005515
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 692 IPR001680 GO:0005515
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 732 764 IPR001680 GO:0005515
Bva06g01051 848 Pfam LisH 10 35 IPR006594 GO:0005515
Bva06g01051 848 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 848 IPR044716 GO:0003714
Bva06g01051 848 Coils Coil 79 99 - -
Bva06g01051 848 Gene3D - 541 696 IPR015943 GO:0005515
Bva06g01051 848 ProSitePatterns Trp-Asp (WD) repeats signature. 626 640 IPR019775 -
Bva06g01051 848 MobiDBLite consensus disorder prediction 389 440 - -
Bva06g01051 848 CDD WD40 569 848 - -
Bva06g01051 848 PANTHER LISH-SSDP-WD40 1 848 - -
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 816 848 - -
Bva06g01051 848 MobiDBLite consensus disorder prediction 389 480 - -
Bva06g01051 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 642 IPR001680 GO:0005515
Bva06g01051 848 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01051 Bva-Chr6 8559920 8566659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01051 645 847 Miscellaneous Gene Families AT5G08390 24.402 8.53e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva06g01051 WD40 0.0038 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01051 - - zju:107435382 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01051 06 8559920 8566659 Bva06g01051 06 8559920 8566659 ECH