Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01047 ATGACGATTGACGACGAGAGCTCTATATACATTGGAGGTCTCCCTTACGATGCCACCGACGATACAATTCGAACTGTCTTCGATTTGTATGGCGCCATTGTTGACATCAAGATTATTAATGATCAACGGACAAGGGGAAAATGTTATGGTTTTGTTACTTTCACAAATCCAAGGTCTGCGATAGATGCAATCAATGACATGAATGGAAGGACCATTGGTGGACGTGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGATCCAATTTTGGTAGAGAACATTTTCCTCATAACATTGACCGGAATGGAGAATGGGATCGCATCAGAAATCGAGACAGAGATTACAATCATGATCGTGATAAAGATGGATACAGGAACCAAAACAGTGATTGGTCCAGAAAGCGAGATAGGTCTCGAGATCATGAGCAAGACAAGGATAGAAGATATGAACGCATACGAGATCATGATTCAGCAAGAGAATCTTTTCTGGACAAAGATCGAAGTCAAGACGAAGAGAGAGCTGATGATGGAAAAGAATACATGTCACATGGTCAAAATATGGAAAGAGACCATCACTTAGATTTGGATACAGAAAGGAAGATGGAGAGGATCAGTGATCCTCATAGAAGTTTTGATGACAACAAAAATGAACAATCGAGAAGAAATAATGGTTTTAGCATTGATCGTTCTTTAGATTCAGACGGTAATCACAATGATCAGGGATTTCAGGTAGAAGGTGAATTAGAGATATCAACTCAAAGGGTTAATCAGCTCAAAAAAGAGGTTTCTCAGATGGAAGAGAGGTTGGAAGAGAGGCGACATCTTATTTCCGATTTACAAAAGCAGTCTAGGAAGTTGGAGGATGCATTGGTTGATGCAAAGAAACTCTCGTCATATCGCCAGGCACAGTTGACCAAGCTACAGAAATGTTTCCTGCAAATAAAAGATTACACTGAAAGGCTTAAAACCTGTGAAAAAGAACTTCAGGCTCTGGTTGGTACAGCAATGTTAGAGGGTGATGATGATGCTATTGGCTTAAAGGAGGGTGATGATGATGCTATTGGCTTAAGGGATGCAGAACTCACTGTCGAAAACGCATG 1103 0.408 MTIDDESSIYIGGLPYDATDDTIRTVFDLYGAIVDIKIINDQRTRGKCYGFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVRTRGGRSNFGREHFPHNIDRNGEWDRIRNRDRDYNHDRDKDGYRNQNSDWSRKRDRSRDHEQDKDRRYERIRDHDSARESFLDKDRSQDEERADDGKEYMSHGQNMERDHHLDLDTERKMERISDPHRSFDDNKNEQSRRNNGFSIDRSLDSDGNHNDQGFQVEGELEISTQRVNQLKKEVSQMEERLEERRHLISDLQKQSRKLEDALVDAKKLSSYRQAQLTKLQKCFLQIKDYTERLKTCEKELQALVGTAMLEGDDDAIGLKEGDDDAIGLRDAELTVENA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01047 367 SMART rrm1_1 8 80 IPR000504 GO:0003723
Bva06g01047 367 MobiDBLite consensus disorder prediction 114 220 - -
Bva06g01047 367 Gene3D - 2 96 IPR012677 -
Bva06g01047 367 MobiDBLite consensus disorder prediction 221 249 - -
Bva06g01047 367 CDD RRM_SF 9 80 - -
Bva06g01047 367 Gene3D - 241 341 - -
Bva06g01047 367 SUPERFAMILY RNA-binding domain, RBD 4 95 IPR035979 GO:0003676
Bva06g01047 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Bva06g01047 367 Coils Coil 308 335 - -
Bva06g01047 367 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 347 - -
Bva06g01047 367 Coils Coil 249 297 - -
Bva06g01047 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Bva06g01047 367 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 347 - -
Bva06g01047 367 MobiDBLite consensus disorder prediction 114 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01047 Bva-Chr6 8534041 8538045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01047 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 32.051 1.10e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01047 - - gmx:100816804 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01047 06 8534041 8538045 Bva06g01047 06 8534041 8538045 ECH