Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01017 ATGTCAGAAAACTTCACAATGAGTTTTCCTGATCACGCTCCGCCCTTTATGCTGTCGCCGCCGCCTTTTGCTGCAGATACTGAAGCCATTGGTGATTGGCATCAAGTCCAAATTCTTAATGAAGAATTCATCCCACATTCGCAATATGAACAAGCTCCTCCATTCAAGAGGGCCAGGACATCTGAGACCATCCCCATTAATTCGAGAATGCAACCACCGCATCCTGCCAACAAAGGAACAGGCCACATCTTCTTTAAGACCCGCTTGTgtgcaaaatttaaaatgggtATGTGTAGGAACGGTGAAAATTGCAACTTTGCACATGGCATTGAAGATATGAGACAGCCACCACCAAATTGGCAGGAACTTGTTGGCATGCGTGATGAAGAGCGGTCATCGGGTAATTGGGATGatgaccaaaaaataattcataagatGAAGTTATGCAAGAAGTATTACAATGGGGAGGAATGCCCTTATGGCGATAGGTGTAATTTTCTTCATGAAGACCCAGCTAAGTTCAGAGATGATTCTGGGAGGTACAGAGAGAGTTCAGCAATAAGCATTGGAACCAATGGATCGCCAAAGTCGCAGGGCAATGGTTCTTTTAATTCGGACAGTAATGGGCTTGTGAAGTCTGCGTTTTGGAAGACCAAGTTGTGTATCAAGTGGGAGACAACAGGTCAATGCGTATTCGGCGATAAGTGTCACTTTGCTCATGGTCAAGAAGAGTTACAAGTGTCTGTTGGACGCATTGAAACAGAAGCTACAAGCTCCATTATAGTTGCAGCGAAACCTATTTCTGTTCCTGCAAATGATGCAAGTCCTAGCAATACAGCAGCAATTCGAAGTGCTCCAAATGAAGAGGAGCAGGGTAAGAAGTGTTTACTCAAGTGGAAAGGGCCTAAGAAGATTAATCGAATTTATGCTGATTGGCTTGATGATGTGCCTCTTCTGCAAAACTA 965 0.4269 MSENFTMSFPDHAPPFMLSPPPFAADTEAIGDWHQVQILNEEFIPHSQYEQAPPFKRARTSETIPINSRMQPPHPANKGTGHIFFKTRLCAKFKMGMCRNGENCNFAHGIEDMRQPPPNWQELVGMRDEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTNGSPKSQGNGSFNSDSNGLVKSAFWKTKLCIKWETTGQCVFGDKCHFAHGQEELQVSVGRIETEATSSIIVAAKPISVPANDASPSNTAAIRSAPNEEEQGKKCLLKWKGPKKINRIYADWLDDVPLLQN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01017 321 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Bva06g01017 321 Pfam CCCH-type zinc finger 147 168 IPR041367 -
Bva06g01017 321 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Bva06g01017 321 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Bva06g01017 321 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Bva06g01017 321 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Bva06g01017 321 MobiDBLite consensus disorder prediction 184 204 - -
Bva06g01017 321 Gene3D - 140 172 - -
Bva06g01017 321 Gene3D - 78 115 - -
Bva06g01017 321 Gene3D - 209 247 - -
Bva06g01017 321 SUPERFAMILY CCCH zinc finger 212 246 IPR036855 GO:0046872
Bva06g01017 321 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 7 315 - -
Bva06g01017 321 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Bva06g01017 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 242 IPR000571 GO:0046872
Bva06g01017 321 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Bva06g01017 321 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Bva06g01017 321 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Bva06g01017 321 PANTHER CCCH ZINC FINGER/TIS11-RELATED 7 315 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01017 Bva-Chr6 8385732 8387966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01017 214 263 C3H Transcription Factor Family AT1G68200 40.385 1.68e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g01017 zf-CCCH 1.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01017 - - aprc:113846184 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01017 06 8385732 8387966 Bva06g01017 06 8385732 8387966 ECH