Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01013 ATGGACGAAGATTTGCTGAAGCGAAACACTGATTGTGTTTATTTCTTGGCCTCCCCTCTCACTTGCAGGAAGGGCGTTGATTGCGAGTACCGGCATAATGAGATGGCAAGGCTGAATCCAAGAGATTGCTGGTACTGGTTTTCTGGGAATTGCCTTAATCCAACATGTGCTTTTAGACACCCTCCATTGGATGGACTTACTGGAGGGTCTTTTGAGTCTTCTTTACCAGGGAAGAAGACAATGGCTCcctgttattttttcttaaatggaTTTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTAATGATAGTATATCTCCTGTCCAACCTGTCAAGAATTCCTCTGAAAGCACCGATGCACTAATGGTAAAGAATAAGGCATCATCAGGAAATAAAGCACGTGCAACATCAACACCAACTGAAAAATATCTTAGTCCATCTGAAACTTCCCCAAAGGTTCCTcttgatttcaaatttcagCCCAAGAGAGATGATCAGCAACCAGTGCCTGAAAATATTAAACCGCAAAGTGATTCCCCACGGATCTCTAGTTACGAGAATAGGGAGCCTACTGTGATTAGGTCACACTCCATCTTTCCTGTGGGTGGCTCTGTTCATGGCACTGAGCAGAGTTCAGAGGAGCAAGTAAATACTAATCACATAGAACCTGAGGAGAGATGGGAATCTTCTCCCGGATTTGATGTTCTTGTTGATGATGACTCAGAGAACTTGGGTTATGAGGATAATTCTGAATATATGTCTGCGCTTGATAGGGAACGCAGGGAAGTGACTGAGCAATACTTGGGTTATGAACTTAAAGAACCAGTTGAGTACGATGTTACGGGCCCAGAAGCTGACATTCAGTATGAACGAGAAATTTATGATGATTACAGATATTTAGATAGCGAGCAGAATCTTGCTATTGACAGAAAAGTTCCATCTTATTATTCGAGAGAGATAGTTGTAGATTCTATATTGTCCAGGAAGAGGATTTACATGCCAGATGAAATGATTGTTTGTGACAGGAACAGAGATCTACGGGACCATCTGAGAAGACGTAGGGAATTTACAGGCTTTTTAAGAAGTCATAAATCTCCTCGTCTGATGGTCCGAAAGGAAGGACAACAAAGGCGTGGTATTGATCAGCGATTAAGTAGAAGATTGACATCAGAAGTGGGATTGAATACTATAGGCTCACTTGGAGAAGGCGAAACTCTTTCGACTGCCAACAAGCATGGCTTATTCAGGCATTCACAGCAACATTGGTCAGGGAAACATTACAGAGAAAAACCAGCTAAAGAGAAGAGGAGATCTATTCAGGAGTCCAGTACGTTTACAGGACCTAAGACTCTAGCACAAATtaaggaagagaagaaggcCGAAGAAAATAGGCATTTTAAAAGCGCATCAACCGACTTCCAGGATCCCAAATCTCTGAGTGATATCCTCAAGGACAAAAAGAGGTTGGATTGTGTCAGAGATGGCAACTGTTG 1502 0.4108 MDEDLLKRNTDCVYFLASPLTCRKGVDCEYRHNEMARLNPRDCWYWFSGNCLNPTCAFRHPPLDGLTGGSFESSLPGKKTMAPCYFFLNGFCNKGDRCSFLHGPNDSISPVQPVKNSSESTDALMVKNKASSGNKARATSTPTEKYLSPSETSPKVPLDFKFQPKRDDQQPVPENIKPQSDSPRISSYENREPTVIRSHSIFPVGGSVHGTEQSSEEQVNTNHIEPEERWESSPGFDVLVDDDSENLGYEDNSEYMSALDRERREVTEQYLGYELKEPVEYDVTGPEADIQYEREIYDDYRYLDSEQNLAIDRKVPSYYSREIVVDSILSRKRIYMPDEMIVCDRNRDLRDHLRRRREFTGFLRSHKSPRLMVRKEGQQRRGIDQRLSRRLTSEVGLNTIGSLGEGETLSTANKHGLFRHSQQHWSGKHYREKPAKEKRRSIQESSTFTGPKTLAQIKEEKKAEENRHFKSASTDFQDPKSLSDILKDKKRLDCVRDGNC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01013 500 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 491 - -
Bva06g01013 500 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Bva06g01013 500 SMART c3hfinal6 78 104 IPR000571 GO:0046872
Bva06g01013 500 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Bva06g01013 500 MobiDBLite consensus disorder prediction 425 443 - -
Bva06g01013 500 MobiDBLite consensus disorder prediction 127 150 - -
Bva06g01013 500 MobiDBLite consensus disorder prediction 455 474 - -
Bva06g01013 500 SUPERFAMILY CCCH zinc finger 78 103 IPR036855 GO:0046872
Bva06g01013 500 MobiDBLite consensus disorder prediction 173 190 - -
Bva06g01013 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 104 IPR000571 GO:0046872
Bva06g01013 500 MobiDBLite consensus disorder prediction 127 190 - -
Bva06g01013 500 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Bva06g01013 500 Gene3D - 5 67 - -
Bva06g01013 500 Pfam Zinc-finger containing family 7 62 IPR041686 -
Bva06g01013 500 MobiDBLite consensus disorder prediction 420 481 - -
Bva06g01013 500 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 491 - -
Bva06g01013 500 Gene3D - 72 141 - -
Bva06g01013 500 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Bva06g01013 500 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01013 Bva-Chr6 8368860 8372525 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g01013 zf-CCCH_3 8.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01013 - - aprc:113847503 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01013 06 8368860 8372525 Bva06g01013 06 8368860 8372525 ECH