Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00984 ATGGTGCAATCAAAGAAATTCAGAGGTGTCAGGCAGCGCCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCACTTCTGAAGAGAAGGGTGTGGCTTGGCACATTTGAAACAGCAGAGGAAGCAGCTCGGGCGTATGATCAAGCTGCTATTTTGATGAGTGGCCGAAATGCCAAAACCAATTTCCCAGTAACTCAAACTGGAGAAGGTGACCCCAAAACAACAATTGAGATTAATTCTCCATCATCTACAAATGGTACTCTGCAACTGCAAGAAATCCTACGCGCAAAGCTTCAGAAATGTAGCAAGGTACCCTCTCCTTCTGTCACCTGCTTGAGGCTTGACACTGAGAATTCTCTCTTGGGAGTATGGCAAAAGCGTGCTGGTCAACGATCCGATTCCAACTGGGTCATGAGGGTAAAtctggaaaagaaaagtaccAATAACGAAGCTGATCAAGATCATGATCATAGTCCTCGGCCTTCTTCTGATTCCCCGGCAGTGACAGGGCAGGAACTGATGGCATCACAGATTAATGAAGAAGATATGATTTCCCTGCAGATGATAGAAGAGCTTCTCAACATGAACTGTCCAAGCCCTCCATTCAATAACATTGAAGAAGGGGGTGCCGGCTTTTTACTTTA 644 0.4519 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQTGEGDPKTTIEINSPSSTNGTLQLQEILRAKLQKCSKVPSPSVTCLRLDTENSLLGVWQKRAGQRSDSNWVMRVNLEKKSTNNEADQDHDHSPRPSSDSPAVTGQELMASQINEEDMISLQMIEELLNMNCPSPPFNNIEEGGAGFLL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00984 214 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bva06g00984 214 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bva06g00984 214 MobiDBLite consensus disorder prediction 146 168 - -
Bva06g00984 214 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 204 - -
Bva06g00984 214 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bva06g00984 214 MobiDBLite consensus disorder prediction 146 161 - -
Bva06g00984 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Bva06g00984 214 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Bva06g00984 214 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Bva06g00984 214 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bva06g00984 214 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bva06g00984 214 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00984 Bva-Chr6 8234431 8235664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00984 1 196 AP2-EREBP Transcription Factor Family AT1G15360 58.937 2.41e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g00984 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00984 - - gmx:100814893 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00703 05 3470467 3471532 Bva06g00984 06 8234431 8235664 BWGD
Bva06g00984 06 8234431 8235664 Bva10g00372 10 4213994 4215260 ECH
Bva06g00984 06 8234431 8235664 Bva06g02398 06 15419717 15420844 ECH
Bva06g00984 06 8234431 8235664 Bva06g00984 06 8234431 8235664 ECH