Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00958 ATGGAGCTCCAACTGGGCCTCGCCCTCCCCAGCAATCCTATTCCCACCAAACCCGCCCTTGATCTCAATTCTAATGCTTACGATGCTATGAACCTCTTGGGTTACTTTCCTTGGAATCATACTTCTAATTCTACCATCACCAATAAACGTAGTTTCAGCCAAGTCTTTAACTTTGAGCATAATAACACAGAGGCTCTGTTTCCAACTACTCTTTCTCTGCTCCCATCAACACCTTGCCACCCGAATGACGATGACGATCGCCAGAGCAACTGCTCTACCACCACAAAGAACGATGGGGATGATGTAGAAGAAGCAGTTGTAGGTTGGCCACCAGTAAATTCCAGGAGAAAGAAACTTCGCCAGGATAACTCCGGTGTTCAAGTTGCAGGAAGTGATCGAACGACGATGATTAATATTTGTGGCTTTGAGAACCTCGGAGGATCAAATAATGCCCTGTACGTGAAGGTGAAGATGGATGGAGTAGGAATTGCACGAAAGATTGACCTTGGTTTGCACCGTTCTTTCGAGTCGCTTAAGGAAACCCTGTTGGACATGTTCggaaaatGTTATCAAGAGTATTCAGACAGCTATAAGCTCGCTTATCAGGACAAAGAAGGTGATTGGCTGCTTGCTGAAGATGTGTCATGGAGAAGTTTCGTCGGGTGCGTGCAACGTCTCAAATTGATGAAGACCAGCGGATG 701 0.4579 MELQLGLALPSNPIPTKPALDLNSNAYDAMNLLGYFPWNHTSNSTITNKRSFSQVFNFEHNNTEALFPTTLSLLPSTPCHPNDDDDRQSNCSTTTKNDGDDVEEAVVGWPPVNSRRKKLRQDNSGVQVAGSDRTTMINICGFENLGGSNNALYVKVKMDGVGIARKIDLGLHRSFESLKETLLDMFGKCYQEYSDSYKLAYQDKEGDWLLAEDVSWRSFVGCVQRLKLMKTSG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00958 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 231 IPR003311 GO:0005634|GO:0006355
Bva06g00958 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 231 - -
Bva06g00958 233 ProSiteProfiles PB1 domain profile. 151 233 IPR000270 GO:0005515
Bva06g00958 233 Pfam AUX/IAA family 42 190 IPR033389 -
Bva06g00958 233 Pfam AUX/IAA family 196 232 IPR033389 -
Bva06g00958 233 MobiDBLite consensus disorder prediction 80 103 - -
Bva06g00958 233 MobiDBLite consensus disorder prediction 77 105 - -
Bva06g00958 233 SUPERFAMILY CAD & PB1 domains 148 230 - -
Bva06g00958 233 Gene3D - 146 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00958 Bva-Chr6 8072761 8074271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00958 153 232 B3 DNA Binding Superfamily AT5G20730 34.940 4.47e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva06g00958 AUX_IAA 9.1e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00958 K14484 - gmx:100808466 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00958 06 8072761 8074271 Bva06g00958 06 8072761 8074271 ECH