Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00900 ATGCATTTGGAGACTCAAAAGGATGGGGATTATTATCCCTCCAAATTAAAGGCGCCAAAATTTTTGGCGCTTGTGGTGCAGTGTGGTCTGTTGAGGATGGGAAGTAGTGGCACTGAGAAGATCCCTATGGATGGCATCACAGAAGGTTCTGAGACCACCATtgagataaagataaaaacattGGATTCACAAACTTATACTCTTAGAGTGGACAAACAGATGCCAGTACCTGCTCTAAAAGAACAGATTGCTTCTGTAACTGGTGTGTTATCAGAGCGACAGCGCTTAATTTGCAGAGGAAGAGTTCTAAAGGATGATCAGCTACTCTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATATGGTTGTCAGGCAACCTGATTTACCATCACCAGGGAGTTTGCCCAACCATTCAGCAACTGAGCCAAATTCAAGTACGGGCCATGTTCACAGTACTCAAGTATCCCCTGGTGTATTCATTGAAACTTTTAATATGCCTACTCAGGGAGATGGAGTTCCTCCTGAAATCAACAGGATTGTTTCTGCTGTTTTAGGATCTCTTGGACTTTCAAATATCATAAATGGCAATGAAGGGATTGATGTCAGGGAGCAAGATTCCCAAGGGGTTGGAAGAACAGCAGGTTCTAGTGGCATACCAGATTCATCTCATCCTCAACCTGAACAAGCTAGTACACGGAATTCATCTGATAGATTGCGTTATAACTTTGGACTTCCAACAGCAGTGCCTTTGGGGCCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACGACTTTGTCCCAGTATCTGAGTCATATAAGGCAGGAGTTTGATGTTATTGTGAGAGAAGGAGGAAATGATGTCCAAGCAACTCAAGCTCACAGGAACCAAGAAATAGGATCTGTCTCTTCTTCACATTCAGGCCCTACACCTGAAACGCTCTCATCGCCTGCTTCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGTTCTCAGAACAAGCTGGCGAGTGCTTACTTCAACTTGGAAGGGAACTGGAGAATCAACCGAATGTGACTGATCCCTTGTTGCGGCCAAGCATTCAGTCTAGGGCTTGGAGAACTGGAGTTCTGTTTTATAATCTTGGTGCATTTTTACTTGAGCTTGGTCGAACAACCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTTGTTAATGGTGGACCTGCAGTTTTTATATCCTCATCTGCTCCTAATAATATCATGGTTCAGCCTCTTCTTTTTCAACCTGGAGGAAACTTTGGTTCTGTCCCCACGGGGGCTGCCCAGTCTGGTTCTGGTTTAGGTGCTGGACTTGGTTCAAGTTTTTTCCCAAGGCGTATTGATATACAGATACGACGAGGTTCATCAACAACAATACCCAATGGGGATCGAGATGAACACGGTGACACAATTTCTGCCTCACCACAAAGAAATCCAGGCAATACTTCTGCCAGTCCAGCAACCTTAAGACTTGCAGAGGATCCATCATTTGCTGGGGAGTCGGGAGTACGGATAGTCCCAATTAGAACCATGGTTGCTGCAGTACCTGGTTCCTTAGGTCGCCCACCTTCTGAATCAACTGGTAATCCTGTAGGACTTTACTATCCACTTCTTGGGAGATTTCAGCATGTATCTACTGGGCATGGGAATAGCGAACAGGGATCTCAACCATCTGGTCAGCTTCAGCCGTCCATTATTCAATCCATTCTCCAAAGGCAAAGCAATGGAGATCCTGCAACAAATGAATCCTTGTCAGCTACCCAAAACAACCAAGATTCTCAGAGACAGATACCCAACAATGTACTTCAGTTTTTAAGGTCACTTTTTCCTGGTGGTGAACTTCGTGTCGAAGATTCCATTTTACAGGGAACAAGTACTGCTACCTCAGAGCATGCTGGAACGTCGAGGGGTGCTGTTCATGTCCCCGAACCAGACGCTAGAGTTAGTGATGAAGGAATGTTTTTATCTAATCTACTCCGAGAGATCATGCCCGTGATATCTCAACTACAAGCATCTGACACACAAAGGGAAAATGCTTCAGGGATTCAAATAGGAGAAGATTCTTCCACCCAGGATGGTACTGATACTGGGACATCGACATCACGCAGACGCGCTGATTCTGAACCAGGCCCGCCTTCTCCTCCAAAACGGCAGAAGCTAGAGTG 2192 0.4526 MHLETQKDGDYYPSKLKAPKFLALVVQCGLLRMGSSGTEKIPMDGITEGSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICRGRVLKDDQLLSAYHVEDGHTLHMVVRQPDLPSPGSLPNHSATEPNSSTGHVHSTQVSPGVFIETFNMPTQGDGVPPEINRIVSAVLGSLGLSNIINGNEGIDVREQDSQGVGRTAGSSGIPDSSHPQPEQASTRNSSDRLRYNFGLPTAVPLGPLQPPVIPDSLTTLSQYLSHIRQEFDVIVREGGNDVQATQAHRNQEIGSVSSSHSGPTPETLSSPASLAEVLLSTRRMFSEQAGECLLQLGRELENQPNVTDPLLRPSIQSRAWRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISSSAPNNIMVQPLLFQPGGNFGSVPTGAAQSGSGLGAGLGSSFFPRRIDIQIRRGSSTTIPNGDRDEHGDTISASPQRNPGNTSASPATLRLAEDPSFAGESGVRIVPIRTMVAAVPGSLGRPPSESTGNPVGLYYPLLGRFQHVSTGHGNSEQGSQPSGQLQPSIIQSILQRQSNGDPATNESLSATQNNQDSQRQIPNNVLQFLRSLFPGGELRVEDSILQGTSTATSEHAGTSRGAVHVPEPDARVSDEGMFLSNLLREIMPVISQLQASDTQRENASGIQIGEDSSTQDGTDTGTSTSRRRADSEPGPPSPPKRQKLE 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00900 730 SMART ubq_7 54 125 IPR000626 GO:0005515
Bva06g00900 730 MobiDBLite consensus disorder prediction 580 604 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 132 153 - -
Bva06g00900 730 CDD Ubl_ubiquitin_like 56 123 - -
Bva06g00900 730 ProSiteProfiles Ubiquitin domain profile. 54 129 IPR000626 GO:0005515
Bva06g00900 730 MobiDBLite consensus disorder prediction 209 239 - -
Bva06g00900 730 PRINTS Ubiquitin signature 64 84 IPR019956 -
Bva06g00900 730 PRINTS Ubiquitin signature 106 127 IPR019956 -
Bva06g00900 730 PRINTS Ubiquitin signature 85 105 IPR019956 -
Bva06g00900 730 SUPERFAMILY Ubiquitin-like 49 133 IPR029071 -
Bva06g00900 730 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 592 730 - -
Bva06g00900 730 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 33 584 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 206 239 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 462 504 - -
Bva06g00900 730 Pfam Ubiquitin family 56 126 IPR000626 GO:0005515
Bva06g00900 730 MobiDBLite consensus disorder prediction 679 730 - -
Bva06g00900 730 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 592 730 - -
Bva06g00900 730 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 33 584 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 679 715 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 125 153 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 481 498 - -
Bva06g00900 730 MobiDBLite consensus disorder prediction 295 315 - -
Bva06g00900 730 Gene3D - 47 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00900 Bva-Chr6 7759958 7769349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00900 54 125 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.722 4.48e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00900 K23390 - gmx:100783070 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00900 06 7759958 7769349 Bva06g00900 06 7759958 7769349 ECH