Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00898 ATGTGTGTGCAGGACGCGGACCAAGGTGCCCAAGGTATGGAGAACCTCGACAACAGGATAAAGTCATGGCCTTTACATTGCGAGCTCTTGCATACCCAGATGCACAACTGCGAAGAAGGATCTCCTTTGAAATCTCCCAGTGATCGTCTGGAAAGCATATGTGAGGATACAGTTATTGCGGACAAAAAACAGAATACGATGAACTTCGTCCCTTGTCTTCGGTCTGGAGAGTGGTCAGATATAGGTGGTCGCCCTCATATGGAAGATACCCATATATGCATCGGAGACTTAGCAAAGAAGTTTGGTTTTGATGTCCTTGGTGAGGAAGctgtttcattttatggtGTATTTGATGGACATGGAGGTAAGAGTGCTGCTCAATTTGTCCGTGATCATCTGCTAAGAATCATTGTCGAGGATGCCAACTTCCCTTTGGAACTTGAGAAGGTGGTCACAAGGTCATTTTTGGAGACAGATGCTGCATTAGCAAAGACATGTTCACTTGAGTCTTCCCATTCTTCTGGTACAACTGCACTAACGGCAATTATTTTTGGAAGGTCTTTACTCATAGCCAATGCTGGAGACTGCCGAGCTGTTTTGTCCCGACACGGAATGACTATAGAAATGTCCAAAGATCATAGACCATTTTGCAGCAAAGAAAGGAGACGGATTGAGTCGTTGGGTGGCTTCATTGATGATGGTTATCTGAATGGACAGTTAGGTGTGACTCGTGCTCTTGGTGACTGGCATCTTGAAGGTTTGAAGGAAATTAGTGAAAGAGGTGGACCACTGATTGCTGAGCCAGAACTTAAATTGATAACATTGACAAAAGAAGATGAGTTCTTGATAATTGGTAGTGATGGTATCTGGGATGTTTTTACTAACCAAAATGCTGTAGATTTTGCTCGGAGGAGGCTTCAAGAGCACAACGATGTGAAACTCTGCAGCAGGGAAATAGTGGAGGAAGCAATAAAGAGAGGATCAACGGACAATTTGACAGCGGTGATGGTGTGTTTTCACTCAGATCCACCACCGGCGGTGGTAGTAGAAAGGCCAAGAGTCAGGAGAAGCATTTCTGCAGAGGGACTTCAGAATCTTAAAAGCCTGCTAGAAGGATA 1118 0.441 MCVQDADQGAQGMENLDNRIKSWPLHCELLHTQMHNCEEGSPLKSPSDRLESICEDTVIADKKQNTMNFVPCLRSGEWSDIGGRPHMEDTHICIGDLAKKFGFDVLGEEAVSFYGVFDGHGGKSAAQFVRDHLLRIIVEDANFPLELEKVVTRSFLETDAALAKTCSLESSHSSGTTALTAIIFGRSLLIANAGDCRAVLSRHGMTIEMSKDHRPFCSKERRRIESLGGFIDDGYLNGQLGVTRALGDWHLEGLKEISERGGPLIAEPELKLITLTKEDEFLIIGSDGIWDVFTNQNAVDFARRRLQEHNDVKLCSREIVEEAIKRGSTDNLTAVMVCFHSDPPPAVVVERPRVRRSISAEGLQNLKSLLEG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00898 372 SUPERFAMILY PP2C-like 64 340 IPR036457 -
Bva06g00898 372 CDD PP2Cc 74 339 IPR001932 -
Bva06g00898 372 Gene3D - 55 342 IPR036457 -
Bva06g00898 372 ProSiteProfiles PPM-type phosphatase domain profile. 74 339 IPR001932 -
Bva06g00898 372 Pfam Protein phosphatase 2C 84 331 IPR001932 -
Bva06g00898 372 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 360 - -
Bva06g00898 372 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Bva06g00898 372 PANTHER PROTEIN PHOSPHATASE 2C 1 360 IPR015655 GO:0004722|GO:0006470
Bva06g00898 372 SMART PP2C_4 64 337 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00898 Bva-Chr6 7752117 7755520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00898 63 372 PP2C-type Phosphatase Gene Family AT2G25620 61.465 1.56e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Bva06g00898 PP2C 9.6e-69 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00898 K14803 - gmx:100820303 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00780 05 3931724 3935485 Bva06g00898 06 7752117 7755520 BWGD
Bva06g00898 06 7752117 7755520 Bva06g00898 06 7752117 7755520 ECH