Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00894 ATGGGTGCGACCAATAGTCGACCGGGGTCACGCTCTTCTACTCCCCGAGTCAACCGCACCAACCGCTTCAGACTATCCTCTCTTCTCTGCGGTGGCTCTTCCTCCCGTTCTACTTATGAGATGGAAGATCTTCCTACTGAACTTCGGGTAGATACTGCTACGGACTTAAAGAAAGTCATTGAGGAATCATCTTTAACATGTTGTACAGAAGCTAGGATTAGCAGCACACTTGGTGAAACTGCAACCTCATCTGATACCAGGAGTGTATTCAGTGAGAATATTATCTTTGAGGGCTCTGCAAGAAATGTTGCTGCTGATAATCGGAGGAATTGCCTGTGTGAAAGTAGGGAGCTAGTTCCTCCACGTAGGGTAAGTGCTGATCATGAATCTTTTAGAGAAAGTATCAACACAGCTAGTACTTCATTTGTAGAACAACGGTCTTCAGATCCAGTATCTGTAAATGTTTCTGCTAACAAGGATCTAGTCAATAAGATTGGTAATTCAGTGGATAGTGGTGTCAGTCAAATCCCTCGTGAGACAATGCATCCAATGAGCTCAACCCCTCAAGAGCACGGAGGTTCCAGTTCTGATGAAATTTCTCTTGAGAATCCTATGGGTGCAGTTTTAGCCGTCCAGAATTCTGTTTCCAATCCTGTTTCTCATGTTTCCAATTTACCAGTGACATCTCAGCTTCCAGAAAATGAACCTCGTCATGGGTCAATTCCTTCAGGATTAGGACTTATTGTATCCAATAGGGAAGGAGGACAGGGAAGTGAAAATGTGCTTCATCTCGATGTGGTCACTATATCTTCCAACACTTTGTCTGATAGCAATGCTGATGCCAGCGATCATGATGCCAGAAGGAATGGTAGAAGACTATTTTGGGATTCTTTTTCACAACGTAGTTCTAGAAGGCTAGGTGATTCTCCAACCATTGTTTTCTCAGCTGGTGACACTGATGATCCAGGATCCCATGATCAATGGCTTCTTGATTTGAGTGGTGATTTCTCAAATGATGGGGTTGGAGGTGAGTCTGGATACATAGGAAGCAGAATTCATAGATTGGATGAACGAATGCGGCACTCTAGATCAGAGATCTGGGAAAGACTTCGTGGAGGCCTTGATGAAATTGGTCGTTGGAATTCTTCTTGTCCACTGGGACTCCACCCTGATGGCTTGTGCCAATGTGATTCCTCCCCAATAACAGAAGAATCTAGCACCCGAGCAAGTATATCAAGAATAGTCATGCTTGCTGAAGCTTTGTTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTTTCACTTTCCCTATCCATGGTCTCACTCCCAGCACCAGAATCAATTGTTGACTCTTTTCCTCTGAAATGTCATAAGAAGGATGACGCAGCTAATGGTGGCGATAATGCTGAACAATGTTACATTTGCTTGTCGGAGTATGaagaaggagagaaaataagagtgCTTCCTTGCAACCACGAGTATCACATGTCATGTGTTGATAAGTGGCTTAAAGAGATACATGGGGTATGTCCTCTTTGTCGCGGGTATGTTTGTGGAGGGTTCACTGACTCTTCTGCCTCTAACACACAAGTTCCATCTCAATG 1604 0.4358 MGATNSRPGSRSSTPRVNRTNRFRLSSLLCGGSSSRSTYEMEDLPTELRVDTATDLKKVIEESSLTCCTEARISSTLGETATSSDTRSVFSENIIFEGSARNVAADNRRNCLCESRELVPPRRVSADHESFRESINTASTSFVEQRSSDPVSVNVSANKDLVNKIGNSVDSGVSQIPRETMHPMSSTPQEHGGSSSDEISLENPMGAVLAVQNSVSNPVSHVSNLPVTSQLPENEPRHGSIPSGLGLIVSNREGGQGSENVLHLDVVTISSNTLSDSNADASDHDARRNGRRLFWDSFSQRSSRRLGDSPTIVFSAGDTDDPGSHDQWLLDLSGDFSNDGVGGESGYIGSRIHRLDERMRHSRSEIWERLRGGLDEIGRWNSSCPLGLHPDGLCQCDSSPITEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKCHKKDDAANGGDNAEQCYICLSEYEEGEKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGYVCGGFTDSSASNTQVPSQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00894 534 Pfam Ring finger domain 471 514 IPR001841 -
Bva06g00894 534 SUPERFAMILY RING/U-box 471 517 - -
Bva06g00894 534 SMART ring_2 472 513 IPR001841 -
Bva06g00894 534 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 532 - -
Bva06g00894 534 ProSiteProfiles Zinc finger RING-type profile. 472 514 IPR001841 -
Bva06g00894 534 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 532 - -
Bva06g00894 534 MobiDBLite consensus disorder prediction 166 200 - -
Bva06g00894 534 CDD RING-H2_PA-TM-RING 471 514 - -
Bva06g00894 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 518 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00894 Bva-Chr6 7736854 7740372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00894 381 518 C3H Transcription Factor Family AT5G45290 52.288 2.17e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00894 - - gmx:100783604 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00894 06 7736854 7740372 Bva06g00894 06 7736854 7740372 ECH