Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00892 atggCTGGAATGCTTCCGGGAGTTGAATGCGCTCGAAGGAGACGGTTCCATCAAAGCGGAGGATACTATGATTCACCGGCGATGGCTGCCCATAATTCCACAAGGCgctcttctttttgtttgtacaCAAGCAAACATGAATCTATTCATTTCTCCTCCTCTTTACTGCAAAGAAGCATATTATACCAGGCACACCCAGATGAGAACCTGGGAGGAGCAGCCAGAGAAGCCAAAGAGAGATTGGACGAGAGGTTAAGAGCTCAAATGAAATCAGAAACCAGAAGGCAAAACAGCAAAGAGAAATTGAGATGTAAAGAAGGTAGATCTACATTTTTAGGAGAGTTGCAGATAGAAGTATATGGGTCAAAGAAGAATGGGTCAAGGAAGTTCAGTTGGACCAAATTTAGCTGGAAGGCATCAGAGCAAGATGATTGTGCAGTTTGCTTAGAGCCATTTAGGGTTGGTGAGACACTGATCCACCTCCCATGTGCTCATAGGTTCCATTCAAAGTGCTTAGAGCCATGGCTACAAAATAACACTAATTGCCCGTGTTGCAGGAATGCTATTATTTCTCAgta 578 0.4221 MAGMLPGVECARRRRFHQSGGYYDSPAMAAHNSTRRSSFCLYTSKHESIHFSSSLLQRSILYQAHPDENLGGAAREAKERLDERLRAQMKSETRRQNSKEKLRCKEGRSTFLGELQIEVYGSKKNGSRKFSWTKFSWKASEQDDCAVCLEPFRVGETLIHLPCAHRFHSKCLEPWLQNNTNCPCCRNAIISQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00892 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 190 IPR013083 -
Bva06g00892 192 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 189 - -
Bva06g00892 192 Pfam Ring finger domain 143 186 IPR001841 -
Bva06g00892 192 CDD RING-H2_PA-TM-RING 144 186 - -
Bva06g00892 192 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Bva06g00892 192 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 189 - -
Bva06g00892 192 SMART ring_2 145 185 IPR001841 -
Bva06g00892 192 SUPERFAMILY RING/U-box 132 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00892 Bva-Chr6 7732306 7733481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00892 1 86 C3H Transcription Factor Family AT2G15580 52.632 7.70e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00892 - - vvi:100241393 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00892 06 7732306 7733481 Bva06g00892 06 7732306 7733481 ECH