Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00889 ATGGCTTTCCACGACCATCTTCCTCACGAAATGGCTTTTCAGACTTTCACGGATGAGCAACAGTTAAGTCAAAACAGAGACATGCAGAGGCTTCTACCGCTGTCCTCTGCCGCCACTGGcggtggaggaggaggaggaggagctGCACCAACTTGGCTGAACAACGCCACTATCCGGCAACAGAATTTCTTCCACTTACAACCAGAATCGTCCACGCAAACCGGTGACGACGTCCGTAGCATAATAGGATCCGATAAAAGCATCGATCGCAGTGATCGGAACCGGACCCACAGCAATTGCGAATCCGATGATTTAACAGAATACAAAGCAGATATTTTGGGACACCCTCTATACGACCAGCTCCTATCGGCTCATGTGTCATGTTTAAGGATAGCCACACCAGTAGACCAGCTAACTAGGATCGATACCCAGCTGCAGCAGTCACAGCGCGTGGTGGAAAAATACTCTGGGCTCGGAAATGGAGTGGTCGATGAAAAGGAGCTTGATCAGTTTATGACACATTATGTTCTATTGCTTTGTGCCTTCAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTTGAGCAGTCTCTGCAGAGCTTGACTGgtGTATCTCCGGGAGAAGGGACAGGTGCAACAATGtcagatgatgaagatgatcaaGCAGATAGCAACGCCAACTTATATGAAGGGAGTCTGGATGGTGCTGACAGCCTTGGCTTTGGTCCTCTTGTTCCCACAGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGACACGAGTTGAAGCACGAGCTAAAACAGGGTTACAAGGAGAAAATTGTGGAcataagagaagaaattctGAGAAAGAGGAGAGCGGGGAAGCTGCCGGGCGACACCACCTCCCTTTTAAAAGCTTGGTGGCAGACACATTCTAAGTGGCCCTATCCAACTGAGGAAGACAAGTCAAGGTTGGTGCAGGAAACTGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATAAAccaaaggaaaaggaattgGCACACCAACCCTTCAACCTCCAATTCCTCCAAAAGCAAGCGTAAGAGTAGTGCAGGCGAAAGTAACCAGAGCTTCATGTG 1133 0.4484 MAFHDHLPHEMAFQTFTDEQQLSQNRDMQRLLPLSSAATGGGGGGGGAAPTWLNNATIRQQNFFHLQPESSTQTGDDVRSIIGSDKSIDRSDRNRTHSNCESDDLTEYKADILGHPLYDQLLSAHVSCLRIATPVDQLTRIDTQLQQSQRVVEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSNANLYEGSLDGADSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQTHSKWPYPTEEDKSRLVQETGLQLKQINNWFINQRKRNWHTNPSTSNSSKSKRKSSAGESNQSFM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00889 377 MobiDBLite consensus disorder prediction 212 235 - -
Bva06g00889 377 CDD homeodomain 293 354 IPR001356 GO:0003677
Bva06g00889 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 371 - -
Bva06g00889 377 SMART HOX_1 292 357 IPR001356 GO:0003677
Bva06g00889 377 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Bva06g00889 377 SMART KNOX2_2 157 213 IPR005541 GO:0003677|GO:0005634
Bva06g00889 377 MobiDBLite consensus disorder prediction 82 100 - -
Bva06g00889 377 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Bva06g00889 377 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Bva06g00889 377 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 40 371 - -
Bva06g00889 377 MobiDBLite consensus disorder prediction 68 100 - -
Bva06g00889 377 SMART ELK_2 270 291 IPR005539 GO:0003677
Bva06g00889 377 Pfam KNOX1 domain 108 149 IPR005540 GO:0003677|GO:0005634
Bva06g00889 377 Pfam ELK domain 270 291 IPR005539 GO:0003677
Bva06g00889 377 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Bva06g00889 377 Pfam KNOX2 domain 163 212 IPR005541 GO:0003677|GO:0005634
Bva06g00889 377 MobiDBLite consensus disorder prediction 347 377 - -
Bva06g00889 377 SUPERFAMILY Homeodomain-like 292 358 IPR009057 -
Bva06g00889 377 Gene3D - 289 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00889 Bva-Chr6 7715248 7719478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00889 69 373 Homeobox Transcription Factor Family AT5G11060 73.802 2.45e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva06g00889 KNOX2 2.7e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00788 05 3964621 3968386 Bva06g00889 06 7715248 7719478 BWGD
Bva06g00889 06 7715248 7719478 Bva06g00889 06 7715248 7719478 ECH