Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00877 ATGCTGGACGGGAAAGTCCCCGCCGCGTCCGATTTTCCGGCCGCCAGCTGTGGGGAGCTACCTGTCGCAGTTTCACCGACTGCAGAACCATCTTCAAGTCTCCCTGAAATAGATGATGAGGTGGAGTCGGTCTCTGGAGTTCAAAATGTAAAGAAGGATCCAAGAAAAATAGCGAGAAAGTATCAATTGGCGTTGTGCAGAAAAGCTACGGAGGAAAATATAATTGTGTATTTGGGGACCGGTTGTGGAAAGACCCACATCGCTGTCCTGCTTATGTACGAGATGAGTCATTTGATTCGGAAGCCCCAGAAGAACATATGTGTTTTTCTTGCCCCTACAGTGGCTTTAGTTCATCAGCAAGCGAAGGTCATAGAAGACTCTACTGATTTCAAGGTAGGGGTTTACTGTGGGAGCTCTAGGCGCTTGAAAAGCCATCTTGACTGGGAGAAAGAGATTGAACAATACGAGGTTCTTGCAATGACACCTCAGATACTGAGTTTCAACTTATCTCACTGTTTCATCAAGATGGAGATGATTGcacttttaatatttgatgaatGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGAAATCATGAAAGTTTTCTATAAAACTAATTCCACAAAACTCCCCCGTATATTTGGCATGACTGCTTCCCCAGTTGTAGGAAAAGgtGCTTCTAATAAAGGAAACCTAGCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCCAAGGTATACTCTGTTGAAGACAAGGAGGAGTTGGATACTTTTGTGGCCACTCCTGTGCTTAGAATATATGATTATGGTCCAACTGCAAATGGCACAACTTGTTCATACACTACTTACTATGCAAAACTTGCAGAAATTAAGCGGCAGTGCATAGCAACCCTTAGTAAGAATACTGAAGATCACCAGAAGCGAAGAGACACTAAGAAACTTCTGAACCGAATGCATGAAAATGTGGTTTTCTGTCTGGAGAATCTTGGCATCTGGGGAGCACTGCAAGCTTGTCATATTCTTTTGAGCGGTGATCACTCTGAGAGGATTGAATTAGTAGAGGCAGAAAGAAATCCAAGTGATTATCCTTTGTCTGACAAATATGTGGCTCAGGCAGCCGAACTCTTTACTTCTGAATGCAAGAAAGATGATGGTGTATCTGATCCATCTTCAGTGGAAATCTTAGAAGAGccttttttttcaagaaagcTTTTACGCCTTATTGGGATACTGTCCTCCTGTAGCTCACGACCAAATAtgaaatgtataatttttgtaaatagaATTGTCACTGCAAGATCTTTATCCTACATACTACAAAAGCTTAAGTTGCTTTCGTCTTGGAAGTCTGATTTTCTAGTAGGAGTTCACTCTGGGCTGAAGAGTATGTCACGGAAGACCATGAACTTCATTCTTGAAAAGTTCCGCTCTGGGGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAGGAAGGACTTGACATTCAGACATGTTGTCTTGTTATACGATTTGATCTTCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCCTTTTTGGTGGATAGTGGCAATGAGAAGGATAaagatttaattgaaaattttaaaaaagatgaagaGCGAATGAACTTAGAAATCATGGATCGCACATCCGACGAGAAATTTATCATTCCTGAGGAAAGAATATTCAAGTTGGAGTCATCTGGTGCTTCTGTTAGTTCTGCACATAGTATCTCATTGCTTCATCAGTATTGTTCCAAGCTTCCGCATGATGAGTACTTCGATCCGAAGCCaaagtttttctattttgatgaTTTAGGGGGAACAGTTTGCCACATAACTTTACCCTCCAATGCTTCAATACATCAAATTGTCAGTAGGCCACAATGTTCTATAGATGCTGCTAAAAAAGATGCTTGTCTGAAAGCAATCGAAGAATTGCATAAATTAGGTGCCTTAAATGATTATCTTCTGCCAAAGCAAGACGATACAAACCTGGAGGAGCATGATTTAGTGTTTTCTGATTCAGATGAGTGCAAAGATGACAATTCACGAGGAGAACTTCATGAGATGCTAGTTCCTTCTGCCTTTAGACTAGCATGGATAAACAATGGAAaaattgttcatttttattcttactaCATAAAATTTACTCCCATTCCTGAAGATAGGATCTATAAAAAGTTTGGTCTATTCATCATGACAACTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTGCTGACAAAATTGGTTCCACTTGGAGTTACTGAATTTGACAACGATGAGATTATGACGGCACAGCATTTTCAGGAAATGTTCCTCAAAATTGTTCTTGATCGTTCAGAATTTATTCCTGAATATGTACCCTTGGGAAAAGATGATCTACTTCAAAAAAGCACAAGTATCTCAACCTTCTACCTTTTACTTCCAGTCATTCTGCAAGACAATGAAAATGCTATGTCAATAGATTGGAAAACTATGAGGAGATGCCTTTCTTCACCGATCTTTAGGCATCCGGCAGATACTGTAGATATGGAAACTTTACCTTCAGATATTCATCTGCAACTTGCTAATGGTTGCAGAAGTGTGAGAGATATTGAAAATAGTTTAGTGTATGTTCAACATAAGAATGCGTTTTATTTTGTCACTAATATTGTTCATGAGAAGAATGGACTCAGTCCTTATGGAGCATCAGGCAGTTCAAGCTACATGGATCACTTTATTCAAAAGTTTTCCATTCATCTTAAATACCCTTACCAACCCCTTCTCCATGCAAAACCACTCTTCACTCTGCACAACTTACTTCACAATCGAAGGAATGATGATACAGAAGCACATGAGTTGGAGGaatatttcattgattttccTCCTGAGCTTTGTCAGTTGAAAATAATGGGCTTTTCAAAAGATATTGGCAGTTCGTTATCTTTGTTACCATCAATCATGCATCGTCTTGGAAACTTGCTGGTGGCAGTTGAACTCAAAAATAtgctctcttctttcttcccaGAGGCAGCTAGCATTAGTGCCCTCAGATTTCTAGAGGCAATCACCACGGAAAAGTGCCAGGAGCGTTTTTCCCTTGAAAGGCTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGCTGGACGCCATGTTTTTCTCAAGCATGATCACCTTGATGAAGGAGACCTTACAAGAAGGcgttcaaatattgtagaaaatTCCAATTTATATAAGTTAGCTATCAAGCACAAATTGCagGTATACATTCGTGATCAGGCATTTGATCCCTGCCAATTCTTTGCATTAGGCCGTCCTTGCCCAAGAGTGTGTACCGAGGAAACTGAACAAAGTATTCATTCTTGTTTAAATTCTGTTAAGAATGAGGAAAGTACAACTGAAGTTCCATGCAGTAAAAATCACCACTGGTTACATAGGAAAACAGTTGCTGATGTGGTTGAAGCTCTTGTTGGCGCACTCATAGTTGACAGTGGTTTCAAAGCTGCAACTGCATTTCTTACTTGGATTGgcataaaaattgattttgcagCCTCACAAGTGCTCAAGATTTGCACAGAAAGTACTAGCTACATTCCTCTTTCTGCTAGTGTGGATATTCCTTCCCTTGAAGATCATCTAGGATATCACTTTCTGCATAAGGGTTTGCTTCTCCAGGCATTTGTACACCCTTCTTACAGTAAACACGGAGGAGGCTGCTATCAGAGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTACTTGATTACTTCATACCTCTACTCAGCTTATCCAACACTAAAACCTGGTCAATTAACAGATTTGAGATCTGTGTCGGTGAACAATAAGGCATTTGCCCATGTTGCAGTGGATCGaagttttgataattttcttttatgtgatTCAAGCACTCTCTCTGAGGCAATAAAAAAGTATGCAGATTACATCAGAACACCTGTATTGCATAAGGACATTTCTGGAGGGCCAAAATGTCCAAAGGCCTTGGGTGACTTGGTGGAATCTTGTATTGGTGCCATTCTCCTTGACTCAGGGTTCAATTTGAACAGCGTTTGGAAGATTATGACTTCGTTCTTGGATCCAATTATGAAATTCTCGTGCTTGCAACTTAGTCCTGTTAGGGATTTGCAAGAACTTTGCCAATCCCATAATTTGGAGTTAAAATTCTTGACATCTAAAACAGTCAGAGTATTTTCAGTTGAAGCCAGAGTAACTGGGAAAGATATCTCAGCAACTGCTTCAGCAACCAGCCTGAACCGAAAAGAGGCTGTAAGAATTTCTTCACAGCTAGtactttcaaaattaaagGCTCAAGGTTGCACACCAAAGTCAAAAACTTTGGAGGAAGTTCTTAAAACAAGCTCTAAGAGGGAAGGTAAACTTATTGGCTATGATGAAATACCAATTGATGTAACGGCTATTAATACCAATGGGACCGTAATGGTTAAGCAGAACCTACGCAGCAATTTTAACCAAGCAATTCGTCCTATTCGTGAGGTACTTGATATATGCTCCCCTTCTGCGCTACTTGTCAGTCAACGGCCTCAATCTTCTTTTGGAACAATTGATGAGAAGCTTGATAAGTCCTTTAAAGATCTTGATCATGACACGGACTCGGAAAGGACAGGTTTCTCGGACAAAAGAACAGCAAGGTCTCGATTGTATGAATTCTGTGCTGCTAATTGCTGGAAACCTCCTTTATTTGAAAGCTGTAAAGAGGAGGGACCAAGCCACCTGAAGTTATTTACTTTTAAGGTGACATTGGAGATAGAAGAGTCACCAGATGTGATTATTGAGTGTTTTGGGGAACCTctatcaaagaagaaagatgcaGCAGAAAATGCAGCTGAGGGTGCTTTATGGTACTTGCAACAGCAAGGATATCTGCTCGATGGTAATTG 4973 0.3875 MLDGKVPAASDFPAASCGELPVAVSPTAEPSSSLPEIDDEVESVSGVQNVKKDPRKIARKYQLALCRKATEENIIVYLGTGCGKTHIAVLLMYEMSHLIRKPQKNICVFLAPTVALVHQQAKVIEDSTDFKVGVYCGSSRRLKSHLDWEKEIEQYEVLAMTPQILSFNLSHCFIKMEMIALLIFDECHHAQVKSNHAYAEIMKVFYKTNSTKLPRIFGMTASPVVGKGASNKGNLAKSINSLEHMLDAKVYSVEDKEELDTFVATPVLRIYDYGPTANGTTCSYTTYYAKLAEIKRQCIATLSKNTEDHQKRRDTKKLLNRMHENVVFCLENLGIWGALQACHILLSGDHSERIELVEAERNPSDYPLSDKYVAQAAELFTSECKKDDGVSDPSSVEILEEPFFSRKLLRLIGILSSCSSRPNMKCIIFVNRIVTARSLSYILQKLKLLSSWKSDFLVGVHSGLKSMSRKTMNFILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNEKDKDLIENFKKDEERMNLEIMDRTSDEKFIIPEERIFKLESSGASVSSAHSISLLHQYCSKLPHDEYFDPKPKFFYFDDLGGTVCHITLPSNASIHQIVSRPQCSIDAAKKDACLKAIEELHKLGALNDYLLPKQDDTNLEEHDLVFSDSDECKDDNSRGELHEMLVPSAFRLAWINNGKIVHFYSYYIKFTPIPEDRIYKKFGLFIMTTLPMEAEKLELDLHLAHGRSVLTKLVPLGVTEFDNDEIMTAQHFQEMFLKIVLDRSEFIPEYVPLGKDDLLQKSTSISTFYLLLPVILQDNENAMSIDWKTMRRCLSSPIFRHPADTVDMETLPSDIHLQLANGCRSVRDIENSLVYVQHKNAFYFVTNIVHEKNGLSPYGASGSSSYMDHFIQKFSIHLKYPYQPLLHAKPLFTLHNLLHNRRNDDTEAHELEEYFIDFPPELCQLKIMGFSKDIGSSLSLLPSIMHRLGNLLVAVELKNMLSSFFPEAASISALRFLEAITTEKCQERFSLERLEVLGDAFLKFAAGRHVFLKHDHLDEGDLTRRRSNIVENSNLYKLAIKHKLQVYIRDQAFDPCQFFALGRPCPRVCTEETEQSIHSCLNSVKNEESTTEVPCSKNHHWLHRKTVADVVEALVGALIVDSGFKAATAFLTWIGIKIDFAASQVLKICTESTSYIPLSASVDIPSLEDHLGYHFLHKGLLLQAFVHPSYSKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPTLKPGQLTDLRSVSVNNKAFAHVAVDRSFDNFLLCDSSTLSEAIKKYADYIRTPVLHKDISGGPKCPKALGDLVESCIGAILLDSGFNLNSVWKIMTSFLDPIMKFSCLQLSPVRDLQELCQSHNLELKFLTSKTVRVFSVEARVTGKDISATASATSLNRKEAVRISSQLVLSKLKAQGCTPKSKTLEEVLKTSSKREGKLIGYDEIPIDVTAINTNGTVMVKQNLRSNFNQAIRPIREVLDICSPSALLVSQRPQSSFGTIDEKLDKSFKDLDHDTDSERTGFSDKRTARSRLYEFCAANCWKPPLFESCKEEGPSHLKLFTFKVTLEIEESPDVIIECFGEPLSKKKDAAENAAEGALWYLQQQGYLLDGN 1657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00877 1657 CDD SF2_C_dicer 400 535 - -
Bva06g00877 1657 Pfam PAZ domain 888 1009 IPR003100 GO:0005515
Bva06g00877 1657 CDD DSRM_DCL_plant 1580 1649 - -
Bva06g00877 1657 Coils Coil 1397 1417 - -
Bva06g00877 1657 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 564 IPR001650 -
Bva06g00877 1657 Pfam Ribonuclease III domain 1053 1184 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 Pfam Ribonuclease III domain 1260 1369 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 Gene3D - 400 563 IPR027417 -
Bva06g00877 1657 SUPERFAMILY PAZ domain 886 986 IPR036085 GO:0005515
Bva06g00877 1657 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1573 1649 IPR014720 -
Bva06g00877 1657 Gene3D - 1580 1649 - -
Bva06g00877 1657 Gene3D - 56 312 IPR027417 -
Bva06g00877 1657 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1395 1461 IPR014720 -
Bva06g00877 1657 SUPERFAMILY dsRNA-binding domain-like 1573 1651 - -
Bva06g00877 1657 PANTHER DICER-LIKE PROTEIN 4 54 1651 - -
Bva06g00877 1657 ProSitePatterns Ribonuclease III family signature. 1260 1268 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 Gene3D paz domain 882 986 - -
Bva06g00877 1657 SUPERFAMILY dsRNA-binding domain-like 1351 1460 - -
Bva06g00877 1657 Gene3D Ribonuclease III domain 1033 1196 IPR036389 GO:0004525|GO:0006396
Bva06g00877 1657 SMART ultradead3 54 259 IPR014001 -
Bva06g00877 1657 Pfam Helicase conserved C-terminal domain 407 525 IPR001650 -
Bva06g00877 1657 ProSiteProfiles Ribonuclease III family domain profile. 1037 1184 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 SMART helicmild6 437 527 IPR001650 -
Bva06g00877 1657 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 591 681 IPR005034 GO:0016891
Bva06g00877 1657 PANTHER DICER-RELATED 54 1651 - -
Bva06g00877 1657 SMART DRBM_3 1396 1460 IPR014720 -
Bva06g00877 1657 SMART DRBM_3 1574 1648 IPR014720 -
Bva06g00877 1657 ProSiteProfiles Ribonuclease III family domain profile. 1225 1369 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1573 1648 - -
Bva06g00877 1657 Gene3D Ribonuclease III domain 1222 1394 IPR036389 GO:0004525|GO:0006396
Bva06g00877 1657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 542 IPR027417 -
Bva06g00877 1657 SUPERFAMILY RNase III domain-like 1224 1388 IPR036389 GO:0004525|GO:0006396
Bva06g00877 1657 SMART riboneu5 1037 1204 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 SMART riboneu5 1240 1392 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 ProSiteProfiles PAZ domain profile. 888 988 IPR003100 GO:0005515
Bva06g00877 1657 CDD RIBOc 1037 1202 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 65 241 IPR014001 -
Bva06g00877 1657 SMART PAZ_2_a_3 866 1014 IPR003100 GO:0005515
Bva06g00877 1657 CDD DEXHc_dicer 56 255 - -
Bva06g00877 1657 CDD RIBOc 1241 1392 IPR000999 GO:0004525|GO:0006396
Bva06g00877 1657 SUPERFAMILY RNase III domain-like 1037 1198 IPR036389 GO:0004525|GO:0006396
Bva06g00877 1657 Gene3D Dicer dimerisation domain 586 683 IPR038248 -
Bva06g00877 1657 Pfam Dicer dimerisation domain 591 676 - -
Bva06g00877 1657 Pfam Type III restriction enzyme, res subunit 69 223 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00877 Bva-Chr6 7644092 7658199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00877 425 524 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 2.05e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00877 K11592 - gmx:100797277 2306.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00877 06 7644092 7658199 Bva06g00877 06 7644092 7658199 ECH