Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00827 ATGTTTGACTGTGGTTACAAGTCACAATACATGGGTggccaaagagaaaaatttgtGAGGTTGGATGATTTGGATTCTAGACTATCTTCATCTTCTGATACTGGAGTTAAAAAAAGTGGGTTTGGTATTGAAAAATTGAGCCATGGTGGCCATGGAAGCTGTGAAACCTCTAGGTCTTTCAAAAGAGGAATGAAAAAGGGGTCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAAGCTGTGTTCCCAGAAGACCTAAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTGTGGAATAAACTTTTTGTTATCTCATGCTTTTTGGCTGTGTCTGTGGATCCATTGTTTTTCTATCTTCCTGTCATCGATGATACATTACATTGTCTTGGTATTGACCGGAAACTAGCAATCATGGTCACCACCCTGAGGACAGTTATTGATGCCTTTTATCTTATACACATGGCTCTTCAATTCCGTACAGCTTATATTGCTCCATCTTCTCGTGTCTTTGGACGGGGTGAGCTTGTGATAGACCCCGCACAGATTGCCAAGCGATACTTGCAGCGATATTTCATCATAGATTTTCTATCAGTGTTACCCTTACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAAAGGTTCAGATGTACTGGCAACAAAGCAAGCCTTGCTGTTTATTATCTTGTTTCAGTATATTCCTAGATTTCTTCGGGTAGGTTCATTGACTTCAGAACTCAAGCGTACTGCTGGTGTCTTTGCTGAAACTGCATGGGCGGGTGCTGCATATTATTTGCTATTATTCATGCTTGCTAGTCATATAGTTGGGGCTTTCTGGTACTTGCTAGCTGTTGAACGGAATGACTCATGCTGGCAGAAGGCTTGTGAAGACACAgggtttaataaaaatttcttgtatTGTGGCAACCAGCTCATGAATGGTTATAGTACTTGGCAGAACAATAGTATAAATATTCTCACTAATGCTTGTGATCCAGAAAACGAAACAGCTTTTGATTATGGAATCTTCAAACAAGCATTGTCATCTGGCATTATATCATCTAAAAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTAAGTACACTGGGCCAGGGACTTCAAACCAGCACTTACCCCCTCGAGGTTCTCTTTTCAATAGCGCTTGCCATATTGGGGCTTATCCTATTTGCGCTTCTAATTGGTAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTTGAGGAAATGAGAGTGAAAAGGCGTGATTCAGAACAATGGATGCATCATCGGTTGCTTCCACCAGATCTTAGAGAGCGGGTCAGGCGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTTGATGAAGAAATGTTGGTTCAGAGCCTACCAAAGGATCTTAGAAGAGATATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGGAGGGTCCCACTATTCGAGAGTATGGATGAGAGATTGCTTGATGCCATTTGTGAGAGGCTGAAACCTTGCTTGTTTACAGAGAATACTTACCTTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTCTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGGTTCTTTAATCGCAGTTTTCTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTTTAACTTGGGCGCTAGATCCCAAATCTGGCTCCAACCTCCCTTCTTCTACTCGAACAGTTAAGGCATTAACTGAGGTTGAGGCATTTGCCTTAATTGCAGAAGAGTTAAAATTTGTTGCCAGTCAGTTCAGACGCCTTCACAGTAGACAGGTTCAACACACCTTCCGATTTTACTCACAACAATGGAGGACTTGGGCTGCATGCTTTATCCAAGCAGCATGGCGTCGTTATTCCAAGAGGAAGACTATGGAGCTtcgtcgaaaggaagaagaacaagagtCAGAAGGAACTCAAAACAACGTCAGCGGGGGTTCATACAGCATTGGAGCCACCTTCTTGGCCTCCAGGTTTGCAGCCAATGCTCTTCGCGGTGTACATCGCAATCGGAATGCCAAGACTGCCAGGGAGTTGGTAAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCAGATGAGTA 2189 0.4207 MFDCGYKSQYMGGQREKFVRLDDLDSRLSSSSDTGVKKSGFGIEKLSHGGHGSCETSRSFKRGMKKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCFLAVSVDPLFFYLPVIDDTLHCLGIDRKLAIMVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVLPLPQIVVWRFLLRSKGSDVLATKQALLFIILFQYIPRFLRVGSLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGAFWYLLAVERNDSCWQKACEDTGFNKNFLYCGNQLMNGYSTWQNNSINILTNACDPENETAFDYGIFKQALSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPLEVLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLATRGVDEEMLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELRRKEEEQESEGTQNNVSGGSYSIGATFLASRFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADE 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00827 729 Pfam Cyclic nucleotide-binding domain 525 614 IPR000595 -
Bva06g00827 729 CDD CAP_ED 504 635 IPR000595 -
Bva06g00827 729 Gene3D Helix hairpin bin 432 495 - -
Bva06g00827 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 727 - -
Bva06g00827 729 Coils Coil 657 677 - -
Bva06g00827 729 SMART cnmp_10 504 635 IPR000595 -
Bva06g00827 729 SUPERFAMILY cAMP-binding domain-like 433 623 IPR018490 -
Bva06g00827 729 Gene3D - 114 429 - -
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva06g00827 729 ProSiteProfiles IQ motif profile. 640 669 IPR000048 GO:0005515
Bva06g00827 729 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 727 - -
Bva06g00827 729 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
Bva06g00827 729 SUPERFAMILY Voltage-gated potassium channels 100 426 - -
Bva06g00827 729 Pfam Ion transport protein 108 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva06g00827 729 MobiDBLite consensus disorder prediction 27 63 - -
Bva06g00827 729 MobiDBLite consensus disorder prediction 709 729 - -
Bva06g00827 729 Gene3D Jelly Rolls 502 622 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00827 Bva-Chr6 7413605 7421311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00827 1 729 Ion Channels AT2G23980 76.400 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00827 K05391 - gmx:100820202 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00827 06 7413605 7421311 Bva06g00827 06 7413605 7421311 ECH