Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00820 ATGGAATTCAAGTTCAGAGCTGGGGATGAACGACCACCATCGTTTCTGCCCCCTTCTTCTACCATTAGCTCCCTCTCGTACCGAGCATTGACAGCTGGTTATTCTAGCCTCGTTCCTACACCGTTCACTAGCCAAATGTGGACCCCAAATAATGCACACGAAGCGATAGTACGCGAGCTCGAGAAAGAGCAAATAAGAAGGGAGATTATTGCAGCCGAGATAGTACGGAGGCAAATGCTGGAGGAAGAAGTAAGAAGGGAACTGATGTTAGAAAGACAGTTGGCAATGCGAAAGAATATGGGTGAGGAATTCTCACTTGAAGAGCAAATAGCAATGAGGTTCTGCCCGAGCTTCCCAATGACACATCCATTAAAAAATCTGCCCTTAGAGGAGAGAATTgcatttccatttccatgtAGCAGTACTATGAATATGTTTGCATTGCCACAAGTACCACAAGTAATGGCCCCTGAAATCAAGCCTTCCCCGGAGACCAAAAAGGATAAGTTGATCATTCTGGCTAAGCCTGACCCAGATCATTTCCGAGCAAAGCGGAAAACCATAGAATCACCTGCAGTTGATGATAGTGAGCGTTCTCCATTTGGTTTGAAGAAAAAACCCAAGGGTAAGTGGAGCTGTGCACTCTGTCAAGTTAGTGCCAGCAGTGAGAAAGTCATAAATGAACACCTTCAAGGTAGGAAGCACAAGGCCAAGGAATCAGGACTAAGAAATGACAAGATTGGATTGGAGGCAAAAGCGGATGGGCAGCTACTTCAATCTGAAGTAGTGTTGAAAGACACAACCAAGAACGTGGATGATAAAGATCTTGTGGAAATAAAAAACGAGGAGCAGCCCCTGCTTGAAAAACAAGATTCAGAAGGACCTGGAGTAAAGAGACCGGATGAAttggagaggaagaagaaattcaagttTTGGTGTGAAATTTGTCAAGTTGGAACTCACTGTCAAATTGTGATGGAGAGCCATAGAAAGGGGAGAAAACACATTGCCCGAATGCTTACATTTAGTGAAAGTAAGGGAATTGTCTTAGTCTCTTCTACCGTTTCATCAGAAGCAACTCAGTCGGCAAAAGATACAGATACCGTGAATGTTCTGACCAAACAAACAGATGGCGGACAATTTTGCAAATACAGATA 1157 0.4244 MEFKFRAGDERPPSFLPPSSTISSLSYRALTAGYSSLVPTPFTSQMWTPNNAHEAIVRELEKEQIRREIIAAEIVRRQMLEEEVRRELMLERQLAMRKNMGEEFSLEEQIAMRFCPSFPMTHPLKNLPLEERIAFPFPCSSTMNMFALPQVPQVMAPEIKPSPETKKDKLIILAKPDPDHFRAKRKTIESPAVDDSERSPFGLKKKPKGKWSCALCQVSASSEKVINEHLQGRKHKAKESGLRNDKIGLEAKADGQLLQSEVVLKDTTKNVDDKDLVEIKNEEQPLLEKQDSEGPGVKRPDELERKKKFKFWCEICQVGTHCQIVMESHRKGRKHIARMLTFSESKGIVLVSSTVSSEATQSAKDTDTVNVLTKQTDGGQFCKYR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00820 385 SUPERFAMILY beta-beta-alpha zinc fingers 304 339 IPR036236 -
Bva06g00820 385 Pfam Zinc-finger of C2H2 type 311 335 - -
Bva06g00820 385 Pfam Zinc-finger of C2H2 type 211 235 - -
Bva06g00820 385 PANTHER OS06G0651300 PROTEIN-RELATED 1 376 - -
Bva06g00820 385 Coils Coil 62 82 - -
Bva06g00820 385 SMART ZnF_U1_5 208 242 IPR003604 GO:0003676|GO:0008270
Bva06g00820 385 SMART ZnF_U1_5 308 342 IPR003604 GO:0003676|GO:0008270
Bva06g00820 385 Gene3D Classic Zinc Finger 188 240 - -
Bva06g00820 385 Gene3D Classic Zinc Finger 289 340 - -
Bva06g00820 385 SUPERFAMILY beta-beta-alpha zinc fingers 193 242 IPR036236 -
Bva06g00820 385 PANTHER OS06G0651300 PROTEIN 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00820 Bva-Chr6 7378456 7381025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00820 164 353 C2H2 Transcription Factor Family AT5G61190 29.245 8.14e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00820 - - jre:108996836 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00820 06 7378456 7381025 Bva06g00820 06 7378456 7381025 ECH