Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00792 ATGGTGAAATTATCACAGCAAACCGAGAAAAACAATGCAAGCAATAACAACCTTAATGCAACAAACTCCGTCGCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCAAGAGATTCTCCTCCTCGACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGGTGGACGGGCCGGTATGAAGCTCATTTATGGGACAAGAATTGCTGGAATGAATCACAAAACAAGAAAGGGCGTCAAGGTGCTTACGATGATGAAGAAGCGGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGGTACTTCTATATTTAGCGACCTATCAGAACGAACTGAAGGATATGGAGGGTCAATCAAGAGAAGAGTATATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAGTTTCAAAATATAGAGGTGTTGCAAGGCACCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTTGGCAACAAATATCTCTATCTTGGAACTTatgCTACTCAAGAAGAAGCTGCCACGGCATATGATATGGCGGCCATAGAATACCGTGGACTCAACGCCGTTACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCCAATAACAGCACTAACGATGAAAACGTGATTAATGTTAACCCTACTGATCAGCCTAACCCTACGAGTGACACCAACTTCACTCCAAACCCTAATCAAGAACACGCTTTCAGCTTTTTCCACAATCAGCAATCATACGGCAACGGAGAAGAAACCGTGTTGGCTCAGCCAAGGGAGGCGGCAACCACCGCCACGTCAGCCCTAGGCCTGCTGCTCCAGTCGTCCAAGTTTAAGGAAATGATGGAGATGGCGTCGTCTGCGGCTGATTTGTCCCCACCGGCGGAGTCAAAGCTGCCGCAGTGCTCATTTCCCGATGACATACAGACATATTTTGAGTGTGAAGATTCTTTAAATTGGCCGGGAAAAGGGGATGACATGATTTTCAGTGAGCTCAACTCCTTCGTTCCCCCTATGTTCCAATGTGATGACTTCGAGGGATTGAGCAAGATCTA 1100 0.4618 MVKLSQQTEKNNASNNNLNATNSVATKVKRTRRSVPRDSPPRRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLATYQNELKDMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNSTNDENVINVNPTDQPNPTSDTNFTPNPNQEHAFSFFHNQQSYGNGEETVLAQPREAATTATSALGLLLQSSKFKEMMEMASSAADLSPPAESKLPQCSFPDDIQTYFECEDSLNWPGKGDDMIFSELNSFVPPMFQCDDFEGLSKI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00792 362 Gene3D AP2/ERF domain 144 205 IPR036955 GO:0003700|GO:0006355
Bva06g00792 362 Gene3D AP2/ERF domain 46 111 IPR036955 GO:0003700|GO:0006355
Bva06g00792 362 SUPERFAMILY DNA-binding domain 144 205 IPR016177 GO:0003677
Bva06g00792 362 Pfam AP2 domain 46 101 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 Pfam AP2 domain 144 195 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 MobiDBLite consensus disorder prediction 1 47 - -
Bva06g00792 362 PRINTS Ethylene responsive element binding protein signature 185 205 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 SMART rav1_2 46 115 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 340 - -
Bva06g00792 362 SUPERFAMILY DNA-binding domain 45 110 IPR016177 GO:0003677
Bva06g00792 362 CDD AP2 144 205 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 340 - -
Bva06g00792 362 ProSiteProfiles AP2/ERF domain profile. 46 109 IPR001471 GO:0003700|GO:0006355
Bva06g00792 362 MobiDBLite consensus disorder prediction 1 29 - -
Bva06g00792 362 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00792 Bva-Chr6 7241969 7244258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00792 42 306 AP2-EREBP Transcription Factor Family AT5G57390 50.000 2.20e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva06g00792 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00792 K09285 - gmx:100804555 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00875 05 4380326 4382572 Bva06g00792 06 7241969 7244258 BWGD
Bva06g00792 06 7241969 7244258 Bva06g00792 06 7241969 7244258 ECH