Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00758 ATGCTGATAACGGTGAGAGAAGAGCAAGCTTCTCTCTGCAGGAAAGGCCTAACAGCACTCAGTCATGGGGTCCTGGAATTCTCTCTGCCAGCTACGAGGCAGCAAATTTTGATCCCTTGGCATGTTTTGGCATTGGCAGCTGCGATAGAGAATAGTTCCATTGATTTTGGGGATTTCTTTAAAGGTCCACTGCCAGGAAAATTTCTCaagtttttagggtttattgCCTTGTCACGACTTGGTGTATACATACCTCTAGGTGGGGTTAATAGAGACGCTTTTGTTGGTAATTTGGATCAGAACAGTTTATTAAGCACTTTGGACTCATTTTCTGGAGGTGGTATTGGTAGACTTGGGATATGTTCCCTTGGTATTGTTCCCTTTATCAATGCACAGATTGTATTCCAGCTTCTTGCACAAATATATCCCAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGgcaggaagaaagaaagttctTCAGTACACTAGATATGCTTCAGTTGGATTTGCCATTGTACAGGCAATTGGCCAAGTACTCTGCCTACGTCCCTCTGTAAATGACTTCGGCACACAGTGGGTTCTTTCGTCTGTTATCTTATTGACTCTTGGCGCTGTATTTACAACATACATTGGTGAACGAATCTCTGACCTTAAACTCGGTAATGGCACCTCTCTGTTGATATTCACAAACATTATCTCCTACCTGCCTGCTTCTTTTGGTAGGACTTTTGCTCAAGCATATCAGGATGCTAATTATGTTGGACTTGCCACTCTCGTCGTGTCCTTCTTTCACTATGTTCAAGAAGCAGAGAGAAAAATTCCTCTTAACTACGCTTCAAGATTCACCAGCAGAATCGGAGGGCTTGAAAAATCTGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTGATGCCTATAATTTTTTCCACGTCATCATTAGCTCTTCCTGGTACTTTGGCACGGTTCACTGGCTTAAGCGCACTGAAGAAGGCTGCCATGGCTTTGAATCCAGGAGTTATGCTCCTTCCATTTGCCGACGAACATGCCTTCTTCAACTACTATTACACTTTCCTACAATTGGACCCCGATGATGTGAGTGAACAGTTGAAACGCCAAGGTGCATCAATTCCACATGTCCGACCTGGCAGAAGTACTGCTGCATTTATTAAAACAGTTCTTAGTCGAATTTCAGTTCTTGGTTCGACATTTTTGGCCATTTTGGCTGCTGGTCCAGCTGTTATTGAGTA 1253 0.4198 MLITVREEQASLCRKGLTALSHGVLEFSLPATRQQILIPWHVLALAAAIENSSIDFGDFFKGPLPGKFLKFLGFIALSRLGVYIPLGGVNRDAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLCLRPSVNDFGTQWVLSSVILLTLGAVFTTYIGERISDLKLGNGTSLLIFTNIISYLPASFGRTFAQAYQDANYVGLATLVVSFFHYVQEAERKIPLNYASRFTSRIGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSALKKAAMALNPGVMLLPFADEHAFFNYYYTFLQLDPDDVSEQLKRQGASIPHVRPGRSTAAFIKTVLSRISVLGSTFLAILAAGPAVIE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00758 417 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 67 416 IPR002208 GO:0015031|GO:0016020
Bva06g00758 417 PIRSF SecY_Sec61alpha 42 417 IPR002208 GO:0015031|GO:0016020
Bva06g00758 417 Hamap Protein translocase subunit SecY [secY]. 56 417 IPR026593 -
Bva06g00758 417 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 44 417 - -
Bva06g00758 417 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 44 417 IPR002208 GO:0015031|GO:0016020
Bva06g00758 417 ProSitePatterns Protein secY signature 1. 119 138 IPR030659 -
Bva06g00758 417 SUPERFAMILY Preprotein translocase SecY subunit 60 415 IPR023201 -
Bva06g00758 417 Pfam SecY 120 416 IPR002208 GO:0015031|GO:0016020
Bva06g00758 417 Gene3D SecY subunit domain 59 417 IPR023201 -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 340 362 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 118 138 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 160 183 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 303 322 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 395 413 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 68 86 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 192 217 - -
Bva06g00758 417 PRINTS Preprotein translocase SecY subunit signature 218 241 - -
Bva06g00758 417 ProSitePatterns Protein secY signature 2. 211 228 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00758 Bva-Chr6 7055989 7059104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00758 45 417 Chloroplast and Mitochondria Gene Families AT2G18710 81.395 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00758 K10956 - gmx:100810430 637.106