Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00748 ATGGCAAAGGGAAATTACTATAGCTACCTTCTTTATTATTGTCTTCTCGTCTCCATTAATGCTCAGATTGGGGCTGCTGTTCCACCCTTAGGAGGGAAGAAGTTAATAATTGGGATACCAAAAAACGTCAAAGTTGGCAACCAGTTTGTTGATGTAAAATTGAACTCTAGTACAAACCAAGTGGTCGATGTCACTGGCTACTCCATTGAAGTTTTCAATGCTACAGTAAATCATCTCTTGCAGTTAGGTTTCAACGTTTCTTATGAATTTCAAGCTTTCGTAGACAGAACTGGGAAGCGAGCTGGGTCTTACAACCAACTTCTACAACAGATTCCTGCTAAAAagtatgaCGCTGTGGTGGGAGACATAACGATTTTGGCCAACCGTGCAAATTACGTGGATTTTACTTTACCATATTGAGAGTCGGTTGCCGAGAACTGCTCTAAGTTTGTGTTGGTGGTATGGTTAATGTTGGCGTTTGTTCTTATGCAAAGTTACACTGCAAGCTTGTCATCAATCTTGACATTGGACCAGTTGCAACCTACGTACCATACCCTGAATGatcttaaaagaaatggagaatATGTTGGGTATCCCACTTCTTCCTATGTACTAGATTTGATGGTGGACAGCTTCAagtttgacaaattaaaactaaaggGATGCAACTCCATTGAAGATTGTCGCGAGGCTTTAGACAAAGGAAGCCATAATGGTGGGATTGTTGCTATGTTTCATGAAGAACCCTACATTAAGGCATTTCCAAGAAACTCAAGTCTGACCTCTTACTTTTCAAGAGCCATACTAAATGTGATTGAAAGTGATGTGATGAAAGAGATTGAACAGAAGTATTTTGGTAGCAATGAAGATAAAGAGCTCCAAGACCAATCTAACGCGTCATTAGACACTCGCAGCCTCACAACACATAGCTTTGCAGGCTTGTTCCTGATCACCGGATTTCTCACCTTTCTCGCTGTGTTAGTCTCGGAAAGCCCCACTTGGCAAAAGCCTCTTAAACTCGCCAAGATTCGTAGCCAGATTTATTTATCCTCTCTACTCTCTAAAAGAACTAATCAGTCAGAGGACGGATCTACGAATGTTGGCTCAACACAAGAACCAAACAACCACGAAATACATTCAATATCTCATGTCGGTCTTCCTATTGAAACATCGCCtgtgta 1181 0.3963 MAKGNYYSYLLYYCLLVSINAQIGAAVPPLGGKKLIIGIPKNVKVGNQFVDVKLNSSTNQVVDVTGYSIEVFNATVNHLLQLGFNVSYEFQAFVDRTGKRAGSYNQLLQQIPAKKYDAVVGDITILANRANYVDFTLPYESVAENCSKFVLVVWLMLAFVLMQSYTASLSSILTLDQLQPTYHTLNDLKRNGEYVGYPTSSYVLDLMVDSFKFDKLKLKGCNSIEDCREALDKGSHNGGIVAMFHEEPYIKAFPRNSSLTSYFSRAILNVIESDVMKEIEQKYFGSNEDKELQDQSNASLDTRSLTTHSFAGLFLITGFLTFLAVLVSESPTWQKPLKLAKIRSQIYLSSLLSKRTNQSEDGSTNVGSTQEPNNHEIHSISHVGLPIETSPV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00748 392 Pfam Ligated ion channel L-glutamate- and glycine-binding site 54 141 IPR019594 GO:0004970|GO:0016020
Bva06g00748 392 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 7 140 - -
Bva06g00748 392 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 141 254 - -
Bva06g00748 392 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 7 140 - -
Bva06g00748 392 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 252 351 - -
Bva06g00748 392 MobiDBLite consensus disorder prediction 357 377 - -
Bva06g00748 392 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 141 254 - -
Bva06g00748 392 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 252 351 - -
Bva06g00748 392 SUPERFAMILY Periplasmic binding protein-like II 24 287 - -
Bva06g00748 392 Gene3D - 43 292 - -
Bva06g00748 392 MobiDBLite consensus disorder prediction 357 392 - -
Bva06g00748 392 Pfam Ligand-gated ion channel 140 318 IPR001320 GO:0015276|GO:0016020
Bva06g00748 392 SMART GluR_14 42 286 IPR001320 GO:0015276|GO:0016020
Bva06g00748 392 Gene3D - 137 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00748 Bva-Chr6 6995898 6998632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00748 147 327 Ion Channels AT5G11210 36.585 6.37e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00748 K05387 - aip:107641909 224.942