Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00702 ATGGACTCTCACTCTTGTTCTTCTACTTCTCCTTCTGCTCACTCTCATTCCCAAAACCAAAACTGGCTCGCTTTCACTCTTTCCCCTCACCCCTCCCACTCTCCCCTCTCCCTTTTCCACtccttctcctcttcttccCCTGCACCTCCCCTCACTCTAACAGGCAGCAACGTCGATGCGTCGCCGGAGGCAGCGGACGCTTCCGTTGGAGGTGCAACTAACCTATCCATTTTCACAGCTGGTCCTAAGTTCGAGGACTTCCTTGGCGGCTCCTCCACCGCCACTACCACAACCACAACCACAACCGCGAGCACTGCACCGCCACCGCTTCCGCACTTCTCCACCGACAACGAGATATACGATTCTGAGCTCAAGACAATAGCCGCCAGCTTCCTTCGCGGCTTCGCTGCCGCTGAACAAACCGAGCCCCAGAAACAACAGCTTCTAGCTCCATCCGAGCCTTCCCCTAGGAAATCCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGTGGCGTCACGCGACATAGATGGACGGGAAGATATGAAGCTCATCTATGGGATAACAGCTGTAGAAGGGAAGGGCAGAGTAGGAAAGGAAGGCAAGGGTTGAACCGGGTCCACGAAGATCTGGGACTGAACCATTTTCCGAGAACTGTCCATTATTGCGACCGGGATAGATGGGAGTTAAAGAATGTGCTCGGGAGCAAATCCCCacTTTATTTGGGTGGCTACgataaggaagagaaagcaGCAAGAGCTTATGATCTCGCTGCTCTCAAGTACTGGGGTCCGACGACCACTACCAACTTTCCTaTATCGAACTACGAGAAGGAGCTGGAAGAGATGAAGAACATGACGAGGCAGGAATTTGTTGCTTCTCTTCGAaggaAGAGTAGTGGTTTCTCTAGAGGTGCCTCAATATACAGAGGAGTGACGAGGCATCACCAGCATGGTCGATGGCAAGCAAGAATTGGCAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTTAgCACCCAAGAAGAAGCTGCTGAGGCTTATGACATCGCAGCCATCAAATTCAGAGGGCTAAATGCGGTGACCAACTTTGACATGAGCCGCTATGACGTGAAGAGCATCGCAAACAGTAACCTTCCCATTGGTGGATTGTCAAGCAAAGCCAAGAACTCCACAGATTCTCACTCGGAGACCAAAAGCCATGAGGGAAGCCGATCTGATGACAGAGATCCATCTTCTGCTTCAGCTTCATCATCATTACCCTTTGCATCATATTCACAGCCATCGAGTTCAACTCTTAGCTTTGCCATTCCCATCAAGCAAGACCCTTCAGATTATTGGTCCATTCTCGGTTACCAAAACCATTCCCTAACTGCTGCCAAGAGCTCTTTTCAGTCTACCAGTAATGGGTCTTCACTGCAAAGCTCTAATGCCACACCCTTCAACGCGGACTtctctgctgctgctgcttcaAATAGTAGTACTACTACCACAGGAAGTGAaggcaataataataatgcgTTTTTCAACGGTGGTATCTTTATGCAACAACAAAATGCAAGTGGCGCCACAGCTTCAGCTTCAAGTTCAATCCCATTTGCCACACCCATTACCTTAAATAGCAATTCTAGTTATGAGAGCTCGTTTGGTTTTGGAAACTGGATTGGACCTACCCTGCACACATTCCAAACCCATGCAAAGCCCAGTCTCTTTCAGACACCAATTTTTGGGATGGAATG 1742 0.4759 MDSHSCSSTSPSAHSHSQNQNWLAFTLSPHPSHSPLSLFHSFSSSSPAPPLTLTGSNVDASPEAADASVGGATNLSIFTAGPKFEDFLGGSSTATTTTTTTTASTAPPPLPHFSTDNEIYDSELKTIAASFLRGFAAAEQTEPQKQQLLAPSEPSPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGLNRVHEDLGLNHFPRTVHYCDRDRWELKNVLGSKSPLYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGLSSKAKNSTDSHSETKSHEGSRSDDRDPSSASASSSLPFASYSQPSSSTLSFAIPIKQDPSDYWSILGYQNHSLTAAKSSFQSTSNGSSLQSSNATPFNADFSAAAASNSSTTTTGSEGNNNNAFFNGGIFMQQQNASGATASASSSIPFATPITLNSNSSYESSFGFGNWIGPTLHTFQTHAKPSLFQTPIFGME 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00702 580 CDD AP2 168 274 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 Gene3D AP2/ERF domain 169 274 IPR036955 GO:0003700|GO:0006355
Bva06g00702 580 Gene3D AP2/ERF domain 308 368 IPR036955 GO:0003700|GO:0006355
Bva06g00702 580 SUPERFAMILY DNA-binding domain 223 274 IPR016177 GO:0003677
Bva06g00702 580 SMART rav1_2 308 372 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 SMART rav1_2 169 278 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 MobiDBLite consensus disorder prediction 89 111 - -
Bva06g00702 580 SUPERFAMILY DNA-binding domain 307 368 IPR016177 GO:0003677
Bva06g00702 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5 41 579 - -
Bva06g00702 580 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 PRINTS Ethylene responsive element binding protein signature 254 274 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 ProSiteProfiles AP2/ERF domain profile. 308 366 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 ProSiteProfiles AP2/ERF domain profile. 169 272 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 Pfam AP2 domain 308 358 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 MobiDBLite consensus disorder prediction 411 431 - -
Bva06g00702 580 CDD AP2 307 368 IPR001471 GO:0003700|GO:0006355
Bva06g00702 580 MobiDBLite consensus disorder prediction 142 161 - -
Bva06g00702 580 MobiDBLite consensus disorder prediction 383 431 - -
Bva06g00702 580 MobiDBLite consensus disorder prediction 89 115 - -
Bva06g00702 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 579 - -
Bva06g00702 580 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00702 Bva-Chr6 6748168 6751682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00702 108 580 AP2-EREBP Transcription Factor Family AT5G57390 53.074 1.68e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva06g00702 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00702 K09285 - gmx:100803558 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00702 06 6748168 6751682 Bva06g00702 06 6748168 6751682 ECH