Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00657 ATGCGGGACAGTGACAAGAAGTTGAATCACAGAGGATCAAGAAAAGTCGGTCATTTAGATCAACAAACTGAGCGAAAGCGACGCTTGTccttgaaattcaaaaaaggAAGTACAAAATCCCAAGGGAAGAAGCTGAAACTGAAATTAAAATCTTCCAAAGACAGAGTTGGTGCAAGCTTGTCAAGGAGGACAGTTACTGACTCTTCCAATAAGGGGCTGAGCAAGGagtcttcaaataaaaaaattgttattagaCGAAATCAGCATAAATCAACTGAAGGAAAATTGTTGCAGAAACCGTCTTCATCAAAGTTACAAGGCAAAAATGTTTCTGTTAGTACTGAGAATGAGGCAAAAGATGGTAATGGGGAggttaaaaatcaaaaactaaagagaaggagaaagaagaaaaggcaaaGAGATAACACAGAGCTTGATGAAGCTTCACGCCTGCAGAGGAGAACAAGGtacctattaattaaaatgaaactgGAGCAGAACCTTATTGATGCTTACTCTGGGGAAGGATGGAAAGGTCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTACAGAGAGCACAGAAGCagattttaaagtgtaaacTTAGTATTCGTGATGCCATTCACCAGTTGGATTCTCTTAGTTCAGTAGGTAGCATTGAAGATTCTGTCATCGCCCCAGATGGGTCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAGTTGCGTGAAGCTTTCCCAGATAATGACATTATACTCTGTGATGGCACGTGCAACCGTGCTTTTCACCAAAAATGTCTTGATCCTCCTCTGGACACCAAAAATAttCCTCCTGAAGATGAGGGATGGTTTTGTAAGTTTTGTGAATGTAAGATGGACATACTGGAGGTAGTGAATGCACATCTTGGGACTCACTTCTCCATGGACTGTAACTGGCAGGATGTATTTAAGGAAGAAGCTGCTTTCCCTGATGGTGATACTGCGTTACTAAATCCAGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATccagagaagagagaagacaACCACAGTATCAGCACAGAAGATACAGATGATGTTGCTTCTGATGATTTAAGCAATTCTCCTTGTTCGTGGTCTTTAGAGGGTGACTTTTCTGTAGGAAAGGAAGCCACTGGCCATGAAGCTGTCAATAGCTGCATAGATTCTGATGAATCTGGTGAAATAGCATGTGGCCGTAGGCAACGTAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTCCTTGCGAACAAGTTAGTGAAGATGAAGACTGGGGTCCTGCCAGAAGAAAACGCAGAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACCCTGCATGAATGTGAGAATAAACATCCCAATACTGAAAGTGAAGATATCATAGAGGAAGTTCCTTCAGGCATGCAAATCAAAAGGCCTTGTTTCAGGATTCCACATGATGCAGTTAAGAAGCTTCGCCAAGCTTTTGCAGAAAATGAACTTCCTTCAAGATCTGTGAAGGAGAGTCTTTCAAAAGAGTTGGGACTTGATGCTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGCTACTTAGCACTTAAAACCAGAAAGCATGCAGAAGTAGCAGAACAACCTCAAAGTTTCATGTCGAGAACCTCGAAGGACTCTAGATTACAAAAGCTGGACAGTGCTGAGATTTTGACCTCAAACGAGGCCTCAAAAATAACTCTGACTGATCTTAAAGATGTCTCCCGTGGAAAGCAAATGAAGTCATCTGGCTATCCTTTGACGAAAAGGAAACGAAACAAATCTCCACCTCAGTCGACAGAAAATGGAGACAAGGACTTAATGGAGTTCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAAGCAAGAAAGAGGAAGCTGAATTTTATGCTTGAAGGAGGCTCTAAGGCAGCAGAGAAGGAATTTGAAAGACTTAGCCATGCGAAGATTAAATTAGATAGCATgaagcaaaaattaattgcaattcAAAATAGAGGAAAGGGTTCAAATGAGCCCCATCTGAAAGAACCAACCGTAATTTATGTACCGGTAGCAGAACTAAGAGAGAAAGTATG 2144 0.3834 MRDSDKKLNHRGSRKVGHLDQQTERKRRLSLKFKKGSTKSQGKKLKLKLKSSKDRVGASLSRRTVTDSSNKGLSKESSNKKIVIRRNQHKSTEGKLLQKPSSSKLQGKNVSVSTENEAKDGNGEVKNQKLKRRRKKKRQRDNTELDEASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAQKQILKCKLSIRDAIHQLDSLSSVGSIEDSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNRAFHQKCLDPPLDTKNIPPEDEGWFCKFCECKMDILEVVNAHLGTHFSMDCNWQDVFKEEAAFPDGDTALLNPEEEWPSDDSEDDDYNPEKREDNHSISTEDTDDVASDDLSNSPCSWSLEGDFSVGKEATGHEAVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPARRKRREKESDAVNTLMTLHECENKHPNTESEDIIEEVPSGMQIKRPCFRIPHDAVKKLRQAFAENELPSRSVKESLSKELGLDAEKVSKWFKNARYLALKTRKHAEVAEQPQSFMSRTSKDSRLQKLDSAEILTSNEASKITLTDLKDVSRGKQMKSSGYPLTKRKRNKSPPQSTENGDKDLMEFSDDVSLKKLLKARKRKLNFMLEGGSKAAEKEFERLSHAKIKLDSMKQKLIAIQNRGKGSNEPHLKEPTVIYVPVAELREKV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00657 714 Pfam Homeodomain 500 544 IPR001356 GO:0003677
Bva06g00657 714 SUPERFAMILY Homeodomain-like 492 559 IPR009057 -
Bva06g00657 714 SUPERFAMILY FYVE/PHD zinc finger 230 295 IPR011011 -
Bva06g00657 714 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Bva06g00657 714 SMART HOX_1 491 553 IPR001356 GO:0003677
Bva06g00657 714 MobiDBLite consensus disorder prediction 335 349 - -
Bva06g00657 714 PANTHER POLYCOMB PROTEIN PCL 1 688 - -
Bva06g00657 714 Coils Coil 668 688 - -
Bva06g00657 714 CDD PHD_PRHA_like 238 290 IPR045876 -
Bva06g00657 714 SMART PHD_3 238 291 IPR001965 -
Bva06g00657 714 Pfam PHD-finger 238 293 IPR019787 -
Bva06g00657 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 688 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 1 27 - -
Bva06g00657 714 Gene3D - 491 557 - -
Bva06g00657 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Bva06g00657 714 MobiDBLite consensus disorder prediction 58 77 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 350 364 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 78 93 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 1 148 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 328 373 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 430 458 - -
Bva06g00657 714 MobiDBLite consensus disorder prediction 598 630 - -
Bva06g00657 714 ProSiteProfiles 'Homeobox' domain profile. 489 549 IPR001356 GO:0003677
Bva06g00657 714 CDD homeodomain 492 552 IPR001356 GO:0003677
Bva06g00657 714 MobiDBLite consensus disorder prediction 28 50 - -
Bva06g00657 714 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Bva06g00657 714 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00657 Bva-Chr6 6443033 6449430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00657 138 570 Homeobox Transcription Factor Family AT4G29940 54.902 4.68e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Bva06g00657 Homeodomain 8.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00657 - - gmx:100787118 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00993 05 5071703 5075796 Bva06g00657 06 6443033 6449430 BWGD
Bva06g00657 06 6443033 6449430 Bva06g00657 06 6443033 6449430 ECH