Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00652 ATGACGGAGCAGACCAAGTTTAGCGTGCTATGCAGCCTCTACACATGGATACAGAGAAGCAAGTCCTCAGCCAAGAAGCGCTCCAAGTTTCGAAAATTCCTCGACTCCTTCTGCAGAGACAAGAACTACTTCGCCGCAATTCGCTTAATTCTTCCTAATCTCGATCGCGAACGAGGCTCCTATGGACTCAAGGAGTCCGTTCTCGCTACTTACCTCATTGACGCTCTTGGAATGTCCAGGGATTCCGAGGACGCTCTTCGTCTCGTCAATTGGCGCAAAGGTGGTGCAAAGACCGGCGCCAATGCCGGAAACTTCGCCCAAGTCGCCGCGGAgGTATTGCAACGTAGGCAAGGGATGCAATCCGGCGATTTGACAATAAAGGAGTTAAACGATCTGCTTGACCAATTGGCTTCAAGCGAAAACAGGGCTGAGAAGGCTTTGATTCTTTCTACCCTTATCAAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATTCTCAAAGATCTAAAGCTGGGAATTAGTGAGAAAAGCATCTTTAATGAATTCCATCCAGATGCTGAAGACATGTTTAATGTAACTTGTGACTTGAAACTAGTTTGTGAAAAGCTGAAGGATCGGAATCAACGCCACAAGCGACAGgACATTGAAGTTGGAAAAGCAGTGCGCCCTCAACTTGCTAAGAGAGTTGCTAACGCATCTGAAGCATGGAAAAAGcTTCATGGGAAGGATGTGGTTGTAGAGTGCAAATTTGATGGTGATCGCAtccaaattcataaaaatggaACAGAGATACATTTCTTTTCAAGGAACTTTATTGATCACTCTGAATATAGACATGCAATGTCGGACATCATAATACAAAACATTCTTGTGGATAGGTGTATACTTGACGGTGAAATGCTGGTCTGGGACACATTATTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATAGCCAAGGCAGCCAGGGATGGACTTGATAGTGATAGACAGTTGCTAGATGTTGCTTTTGATATACTTTATGTTGGAGATACTAGTGTAATTCACCAAAGCTTGAAGGAACGGCATGAACTTCTCCGTAAAGTTGTGAGGCCCTTGAAGGGTCGTCTGGAAATTTTAGTACCTAATGGTGGTCTAAATACTCATCGGTCTCCTGGGGAGCCTTGTTGGTCATTTGTTGCTCATAATGTGGATGAGGTTGAGAGATTTTTCAAAGAAACCATAGAGAATAGAGATGAAGGTATTGTTCTGAAGGACCTCAGTTCCAAATGGGAACCTAGTGATCGTAGTGGAAAATGGCTTAAGTTGAAGCCTGAGTATGTACATCCTGGTTCTGATTTGGATGTACTTATCATAGGTGGTTATTATGGCTCTGGACGACATGGAGGAGAGGTTGCTCAATTCTTGGTTGCCCTTGCAGAGCGCCCGTCTCCAAATACACATCCCACAAAATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTCCTGATGATGAGCTAGATGCTGTGGTGACCAAACTGAAGCCTTATTTCAGGAAATATGAATATCCAAAAAAGAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGAGAGCCCTGAAAAATCAATAATTCTTTCTATAACCAGTGATATTCGAACTATAGAGTCTGAGGTATTTGCTGCACCATACAGCTTAAGATTTCCTCGAATTGATAGGGTGAAATATGACAAGGCTTGGTATGAATGCCTCGATGTGCAATCATTTATTGAACTGGTGCATTCCAGCAATGGTACCACACATAGGGGAACTGAACATGGCAGCAAGCAAGATAGTAAACCAAAACTCATGAAATCCTCTAAGAgaggagagaagaagaatatgtCCATTGTTCCTTCTCATCTAGTTCAGACTGATGTTTCCAGTGTTAAAGGGGGCTCCTTAATATTCTCAAATATGATGTTTTACTTTGTTAATGTCCCTCCGTCTCATTCTCTTGATTCCTTGCGCAAGTTGGTTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAACTCAGTCACCCATTGTATTGCAGCAGATAGCAAGGGGTTCAAATATGAAGCAGCCAAACGTCATGGTGATGTCATTCACTATAATTGGATATTGGACTGCTGCGCACAAAAGAAGCTTGTCTGCTTACAGCCAAAGTACTTCCTTTTCCAATCTGAATcaacagaaaagaaattacaggaagaaattgatgagTTCTCAGACTCCTACTATTTGTATCTTGATCTTGCAGACATCAAACAACTCTTGAGCAATATTCATAGATCAGAAGATATCACCACTATTGACCATTACAGGAAAAAATACTGTCCAAAGGATAAGTGGTCTTACTTTCACGGATGCTCAATTTATTTCCACACTTCCATACCATCTGTGGAAGGAGAATGGGAAGTTCTGCTGGGACTTGCTCTGAGGAGATTGAAGCTTGAAATTCTAATGAGTGGTGGCAAAGTTACCAATAGTCTCAGTCGTGCTACTCATTTAGTGACCTTGTCAGTGCCAGGATATCATGTAGACTTTGAAAATATACTGAGAAGTTTCTGTTCATCTGAGAAGCAATTCCTTGGGAGCAAAAGGTTGCATGTAATTGGGTCCCAGTGGTTAGAAGATTGTGTGGACAGTAACCAGAGACTACCGGAAGAAACATATAGCTTGAAGCCCCATGGAATAGAAGAGTCAGCTACTGAAGAGTGTTCTGGCAAACTTGACTTGGCTTCAGAAGCCCATCTGGGTGGAGATGATATAGAAGACCAGAACGTGTCACTTTTCTCTGATAAAGGAGGTAAACGTAGAAGTACAAGAGCCCCTGGTGAAGAACATATGGACTTGGCGTCCTCAGAGAAGGGtggcaaaaggaaaagaggaagACCTGCAGGCAAAGGTATTAAAAAGGCAAAAACAGGTGCCAACCAAGCTCAAAGAACACGAGCACGAATTGGGAAAAGGCCTGCTAAAATATGTGAAGACGAAACAGATGACAGTGGTTCTCAAGACGATGGGGAGATCGACTCAAGAGAAGGAAGTTTTGACACTTACAAGAAAGGTTCAGAAACCCAGGAGACTGAGAAACGACTGGAAGTCCCAGAGCCAGAAATATTGGAAGGTTCTGAATCATCGGAAAAAGGCAAGGCGGTTAAGGAAGAGGGTTTGAAGGATATCAAACATGAAAAACAATCTGTTCCTGAAATTGACATGACTGACAAGCATGATGATGAAAAACATAAGCCCGAGAAGCCGGAAATCATGGGTGATCCAGTGCAGGCAATGTTATTTAACATGATTCCTAGccttggaatgaagaaagttgaGGAAACCACAAATCGTAATCTTGAAGATGAGAAGGCGCCAGAAAATTCCAATGCAGAGcctacaaggaaaaaaaaagtaagctACAAGGATGTTGCTAATGAACTGCTGAAGGATTGGTA 3500 0.4069 MTEQTKFSVLCSLYTWIQRSKSSAKKRSKFRKFLDSFCRDKNYFAAIRLILPNLDRERGSYGLKESVLATYLIDALGMSRDSEDALRLVNWRKGGAKTGANAGNFAQVAAEVLQRRQGMQSGDLTIKELNDLLDQLASSENRAEKALILSTLIKKTNAQEMKWIIMIILKDLKLGISEKSIFNEFHPDAEDMFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANASEAWKKLHGKDVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYRHAMSDIIIQNILVDRCILDGEMLVWDTLLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERHELLRKVVRPLKGRLEILVPNGGLNTHRSPGEPCWSFVAHNVDEVERFFKETIENRDEGIVLKDLSSKWEPSDRSGKWLKLKPEYVHPGSDLDVLIIGGYYGSGRHGGEVAQFLVALAERPSPNTHPTKFISFCRVGTGLPDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVESPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVKYDKAWYECLDVQSFIELVHSSNGTTHRGTEHGSKQDSKPKLMKSSKRGEKKNMSIVPSHLVQTDVSSVKGGSLIFSNMMFYFVNVPPSHSLDSLRKLVAENGGTFSMNLNNSVTHCIAADSKGFKYEAAKRHGDVIHYNWILDCCAQKKLVCLQPKYFLFQSESTEKKLQEEIDEFSDSYYLYLDLADIKQLLSNIHRSEDITTIDHYRKKYCPKDKWSYFHGCSIYFHTSIPSVEGEWEVLLGLALRRLKLEILMSGGKVTNSLSRATHLVTLSVPGYHVDFENILRSFCSSEKQFLGSKRLHVIGSQWLEDCVDSNQRLPEETYSLKPHGIEESATEECSGKLDLASEAHLGGDDIEDQNVSLFSDKGGKRRSTRAPGEEHMDLASSEKGGKRKRGRPAGKGIKKAKTGANQAQRTRARIGKRPAKICEDETDDSGSQDDGEIDSREGSFDTYKKGSETQETEKRLEVPEPEILEGSESSEKGKAVKEEGLKDIKHEKQSVPEIDMTDKHDDEKHKPEKPEIMGDPVQAMLFNMIPSLGMKKVEETTNRNLEDEKAPENSNAEPTRKKKVSYKDVANELLKDW 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00652 1166 MobiDBLite consensus disorder prediction 1022 1105 - -
Bva06g00652 1166 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva06g00652 1166 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva06g00652 1166 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva06g00652 1166 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Bva06g00652 1166 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bva06g00652 1166 MobiDBLite consensus disorder prediction 935 1109 - -
Bva06g00652 1166 ProSiteProfiles BRCT domain profile. 797 909 IPR001357 -
Bva06g00652 1166 MobiDBLite consensus disorder prediction 935 976 - -
Bva06g00652 1166 MobiDBLite consensus disorder prediction 1128 1153 - -
Bva06g00652 1166 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Bva06g00652 1166 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Bva06g00652 1166 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Bva06g00652 1166 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Bva06g00652 1166 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Bva06g00652 1166 MobiDBLite consensus disorder prediction 610 631 - -
Bva06g00652 1166 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bva06g00652 1166 MobiDBLite consensus disorder prediction 1124 1153 - -
Bva06g00652 1166 SMART BRCT_7 653 729 IPR001357 -
Bva06g00652 1166 SMART BRCT_7 799 899 IPR001357 -
Bva06g00652 1166 Gene3D - 446 605 IPR012340 -
Bva06g00652 1166 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Bva06g00652 1166 Gene3D BRCT domain 666 779 IPR036420 -
Bva06g00652 1166 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Bva06g00652 1166 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Bva06g00652 1166 MobiDBLite consensus disorder prediction 603 631 - -
Bva06g00652 1166 PANTHER DNA LIGASE 4 2 910 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Bva06g00652 1166 CDD OBF_DNA_ligase_IV 448 592 - -
Bva06g00652 1166 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bva06g00652 1166 SUPERFAMILY BRCT domain 790 911 IPR036420 -
Bva06g00652 1166 Gene3D BRCT domain 797 909 IPR036420 -
Bva06g00652 1166 Pfam ATP dependent DNA ligase C terminal region 466 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bva06g00652 1166 SUPERFAMILY BRCT domain 655 741 IPR036420 -
Bva06g00652 1166 Coils Coil 126 149 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00652 214 601 Core DNA Replication Machinery Family AT1G08130 27.654 2.58e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00652 K10777 - gmx:100816002 1790.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00652 06 6415587 6427125 Bva06g00652 06 6415587 6427125 ECH