Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00624 AtggaagatgatgaagcaTGCAACACAGGGCTTTGTCTAGGGCTGGGAATTGGAGGGTATGTGccaaagaaggagaagaaaaaagagaagaagccTTTTCCATGCATGGACCTTGGCTTTGAGCTTTGTCCAAAAGCAGAAGCCATTAACGTGGATAATAAGGCACGGAGAATCAGTTTGAAGAGAACCGATCATGAAAGCCTCCAACACGCGAATGCAAAGAATGATTCTACAAACAACAAGAACGGATGCAGAAAGAAACTAAGGCTCACAAAAGAGCAATCGGCTTTGCTTGAGGACAGCTTTAAGCTTCATATCACTCTCAACACAACAGAGAAACAAGCCCTTGCTGATCAATTGAATCTGAAGCCTAGACAAATCGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGATAGACTGCGAGTTGCTGAAGAAATGCTGCGAAAATCTAACAGAAGAGAACAAAAGGTTGAAGAAAGAACTGCAAGAACTACGCGCACTGAAAATTGAACAATCACCGCTATACATTCAACTCTCAAAGGCAGCGTCTCTGACCATGTGCTCCTCTTGTGAGAAACTgttaaaaccaaatta 614 0.3876 MEDDEACNTGLCLGLGIGGYVPKKEKKKEKKPFPCMDLGFELCPKAEAINVDNKARRISLKRTDHESLQHANAKNDSTNNKNGCRKKLRLTKEQSALLEDSFKLHITLNTTEKQALADQLNLKPRQIEVWFQNRRARTKLKQTEIDCELLKKCCENLTEENKRLKKELQELRALKIEQSPLYIQLSKAASLTMCSSCEKLLKPN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00624 204 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Bva06g00624 204 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Bva06g00624 204 Gene3D - 76 146 - -
Bva06g00624 204 Coils Coil 140 177 - -
Bva06g00624 204 SUPERFAMILY Homeodomain-like 70 142 IPR009057 -
Bva06g00624 204 SMART HOX_1 83 145 IPR001356 GO:0003677
Bva06g00624 204 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Bva06g00624 204 PANTHER - 53 200 - -
Bva06g00624 204 CDD homeodomain 85 142 IPR001356 GO:0003677
Bva06g00624 204 Pfam Homeobox associated leucine zipper 141 174 IPR003106 GO:0006355|GO:0043565
Bva06g00624 204 Pfam Homeodomain 85 139 IPR001356 GO:0003677
Bva06g00624 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 53 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00624 Bva-Chr6 6257490 6258901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00624 1 200 Homeobox Transcription Factor Family AT4G37790 45.833 3.56e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva06g00624 Homeodomain 1.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01020 05 5233858 5235209 Bva06g00624 06 6257490 6258901 BWGD