Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00615 ATGGGTGGTCGAGCTGCTTTCTGGCCCTTCACAATAAGATacttctcctcctcctccttcttcttcctcatcaCCATCGTTATTCTCGCTAGCCAGTGTGTTCCTGCAGAGGCGGATGATTCCAGAAAAACGCCTAATCCTCCTTCAACTGATCCGAATGTTGAAAATGTTAATGGAGAGTCTCCTCCTCCCTCAACACTTGTTCCGCCATCGCCATTTACAACTGGACagaaatttcaattctttaaACCAAGCGTAGCCATTTTAGTGGGCATCATGGTTGCCATGCTTTCTCTTGCCTTTCTCCTCCTTCTTTATGCCAAACACTGCAAGCGTGGGAATGTTACCACTCTCCCGTGCTTTAGGAGGAACCAAACTTCAAGAGGGCCACCAGCTTCCGTCGCAAGGAAGAACTCGGGTATTGACCGCATTGTGATTGAGTCCCTACCGATTTTCCGGTTCGGATCGCTCATGGGGGAAAAGGATGGCCTCGAATGTGCCGTTTGCCTCACAATGTTTGAGTCCACGGAAGTTCTCAGATTGCTTCCGAAATGTAAACATGCCTTCCACGTTGAATGTGTGGATACATGGCTGGACGCACATTCAACCTGCCCGCTTTGTCGCTACCGTGTCGACCCAGAAGACATTCTTCTTGTGGGAGACGAAAAGATTTTGCCATATAATCAACCAATTCCGACCGTTCAAGAAGATGATGACCCGGAACACATTGAGAGCGGAACAAACCAGGGTCTTCGTCGAGTCTCGGGGAGACACTCATCGGCTTGCGAAAGAGGGTTAGCAATTCAGCAACAAACGACGTCGTATAGACGGTCCTTGGACAATGCGGGTACCCTTACCGGTACGAGAAGAAACAGCGAGCCCGTTGGCGCTGATTGCTTAGAGTTAGATCGTCCCAGAATAGACGGGCTACTGTTGAGCCACGACAGCACAAGTTTGTCGCGTAGGTTGGAGCACCGGATCATTGTCTCCCCGTCCCCAAAATCCAGTGGGTTCCACCATCGGTGGAGCGACGTACAAGCGTCGGATCTGCTTTATCTAACATGGGATAAGATCATCAGCGATGGTTGTAGTAGGGTGTCCGCATCATCGGAGCATAGACCGTCACTTTCGCGGCTGCGGCAGCAGCAGAATATGCAGCTGCCGTTGCACTGGAACACGGAGGTAAGTGGTGGACAGGAGGAGGAGGGGAACATTAATAGCAGGAACCGTATGGATGGGAACAGTAGGGACGGCAGAGGCGTAATAAATTCGAGAAGCTTGTCGGAAATCACGGGGCTGAGCAGGTACTGGAGTAGGAACAGGGAGCGAGGTCAGCATCATCAAGAACAAGAGCGACAGGCAGGAGTTGTATCGAGATGGATGGCTTGGATTTCTCAGTCACACCCAGCAGTACGGTACTA 1421 0.4947 MGGRAAFWPFTIRYFSSSSFFFLITIVILASQCVPAEADDSRKTPNPPSTDPNVENVNGESPPPSTLVPPSPFTTGQKFQFFKPSVAILVGIMVAMLSLAFLLLLYAKHCKRGNVTTLPCFRRNQTSRGPPASVARKNSGIDRIVIESLPIFRFGSLMGEKDGLECAVCLTMFESTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGDEKILPYNQPIPTVQEDDDPEHIESGTNQGLRRVSGRHSSACERGLAIQQQTTSYRRSLDNAGTLTGTRRNSEPVGADCLELDRPRIDGLLLSHDSTSLSRRLEHRIIVSPSPKSSGFHHRWSDVQASDLLYLTWDKIISDGCSRVSASSEHRPSLSRLRQQQNMQLPLHWNTEVSGGQEEEGNINSRNRMDGNSRDGRGVINSRSLSEITGLSRYWSRNRERGQHHQEQERQAGVVSRWMAWISQSHPAVRY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00615 473 MobiDBLite consensus disorder prediction 393 411 - -
Bva06g00615 473 CDD RING-H2_EL5_like 165 208 - -
Bva06g00615 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
Bva06g00615 473 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Bva06g00615 473 MobiDBLite consensus disorder prediction 38 69 - -
Bva06g00615 473 Pfam Ring finger domain 165 208 IPR001841 -
Bva06g00615 473 MobiDBLite consensus disorder prediction 393 422 - -
Bva06g00615 473 PANTHER RING-H2 FINGER PROTEIN ATL43 61 467 - -
Bva06g00615 473 MobiDBLite consensus disorder prediction 43 62 - -
Bva06g00615 473 MobiDBLite consensus disorder prediction 231 254 - -
Bva06g00615 473 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 61 467 - -
Bva06g00615 473 SUPERFAMILY RING/U-box 143 213 - -
Bva06g00615 473 SMART ring_2 166 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00615 Bva-Chr6 6229303 6230724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00615 84 463 C3H Transcription Factor Family AT5G05810 43.951 4.98e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00615 K19041 - vvi:100259882 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00615 06 6229303 6230724 Bva06g00615 06 6229303 6230724 ECH