Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00609 ATGATACCTTCTTATCATTATTTACTACCTTCTTCTATGCCTTTAGATCTTAATGAAGATCAAAACCATCTCTTCTGTCCTAACCATCAAccctcttcttcatcttcttctctgcCATATCCTATTGGCTTCAACCCAGATCAAGCAGCAGGATCTTACTACTGGGAAGCAAAGCCCTCACAAATTGATGAAGAGGCTAAGAAAAATGTTCCTTCAAGTGGATCATGGGATCATCCTGCAGCAGAAAGGGGTAAGAGCAAGGGTGCCCTAAAACTCAAACTTTGgaataaagaagaaaggaaagaacatGATAAAGCtgaggaggaggaggatgGTTCACTAAAGTGGCTGCCTTCAAAGATGAGGATCATaaggaagatgatgatggGTTCGGATGATAAGGGTAATTCTGACATATCAGCCAATAATTCTATGCACAAGTTTGAAGATCAGACACAACCATTATCATCACCAGCAACTGATGACAGCAGTAGCAACACTACTTCACACAACAGTAATATCACTATTAGGGTTTGCGCTGATTGCCATACCACTAAGACCCCTCTCTGGAGGAGTGGACCTAGAGGCCCTAAGTCGCTTTGCAACGCTTGTGGAATTCGACAAAGGAAGGCAAGACGGGCCATGGCTGCTGCTGCAGCATTGGAAAATGGCGCAACTCTAGCTACTGCTGGGACACCTAATTCTGTGAAGGGGAATAGTAAGTTGCACAAAcacaagaaagagaacaagCCAAAAATGGGGCGTGCACCGCAGATGAAAAGGAAGCGCCAGCTTCATCAGGCTACAGCGAAGCCAATATCTCGAAGCAAAAACAAGTTTTCTTTGGAGGATTTTGCAATAAGGTTGAGTAACAACTTGGCTCTCCAGCAATTGGTTTTCCCTCAGGATGAGAAGGAGGCTGCGATCCTGCTCATGTCTTTATCTTATGGCCTCGTTCATTG 962 0.3971 MIPSYHYLLPSSMPLDLNEDQNHLFCPNHQPSSSSSSLPYPIGFNPDQAAGSYYWEAKPSQIDEEAKKNVPSSGSWDHPAAERGKSKGALKLKLWNKEERKEHDKAEEEEDGSLKWLPSKMRIIRKMMMGSDDKGNSDISANNSMHKFEDQTQPLSSPATDDSSSNTTSHNSNITIRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAALENGATLATAGTPNSVKGNSKLHKHKKENKPKMGRAPQMKRKRQLHQATAKPISRSKNKFSLEDFAIRLSNNLALQQLVFPQDEKEAAILLMSLSYGLVH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00609 320 Gene3D - 177 215 IPR013088 GO:0006355|GO:0008270
Bva06g00609 320 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 320 - -
Bva06g00609 320 MobiDBLite consensus disorder prediction 239 268 - -
Bva06g00609 320 SMART GATA_3 173 224 IPR000679 GO:0006355|GO:0043565
Bva06g00609 320 MobiDBLite consensus disorder prediction 230 273 - -
Bva06g00609 320 CDD ZnF_GATA 178 206 IPR000679 GO:0006355|GO:0043565
Bva06g00609 320 ProSiteProfiles GATA-type zinc finger domain profile. 177 209 IPR000679 GO:0006355|GO:0043565
Bva06g00609 320 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Bva06g00609 320 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 320 - -
Bva06g00609 320 MobiDBLite consensus disorder prediction 64 89 - -
Bva06g00609 320 MobiDBLite consensus disorder prediction 148 171 - -
Bva06g00609 320 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Bva06g00609 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 175 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00609 Bva-Chr6 6207829 6209617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00609 87 320 C2C2-Gata Transcription Factor Family AT4G26150 34.127 1.52e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva06g00609 GATA 4.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00609 - - gmx:100810698 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01030 05 5277797 5279394 Bva06g00609 06 6207829 6209617 BWGD
Bva06g00609 06 6207829 6209617 Bva06g00609 06 6207829 6209617 ECH