Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00593 ATGGACACTGTCTTCTCCCTTCCTGAAGCCGTCAGAGCTGATTTCTTGCGTACGGTAGCGCAGTCTTGCGGCTGCGCTTACATTTGTGTCTGGTCGTATGATTCCCGCTTTCCTAATCGTTTGTTGTTCTTGGACGGATTGTATAACCAGCCGAGCTCTTCTTTGGTGAACGCTGTTGCTCAGAGTCTTTTTAACGAACAAAGGGGTTTGCAATTTGATGTCACTGGCAACCATGTTCCAGGGCTCGCTTTCAGGAACAATCGCGTCTTCCAATTTGGACAAGGAGATCTTCTAACACTTGCATGGACAGATATACAAAAGCGGTTCTATCAGGAAGCAAGGATTGAGACAGCTGTTTTCATGGGGTGCAACACTGGAGAAATCGAACTTGGGTTCTCAACTATGTCTCAAGATTACATTCAAACAGCACTGAGGAATATTTTTCCCGCTGATGATTTGTCGAGATCACAACCACAGCTGATTGATCAGAATCcaccatcatcatcttcatcttctttgagATCATTATCAAACAGCCCAGAATACTCATCCCTCCTATTCAACATTCCAGGCGCAGCCCATTACCCAGAAACCCTTGGAGGGGTTCCCACAATGCAGCCTGCAAGGCCAGTGTCTACCTCCACTGCTAACAGCCCTCACCAAGCAGCAATCCGAGCATTAGCTCAAGCCTCTCAAATCCAATTGCCCACACCAGAGAACGAAAATGATGCAATAATGAGGGCAATTCTTCATGTTATATCTTCTGACGCACcttcttcttctacttctcATCACCAAACCCATCTAAATTTACCTTACCCTTCAGTGGTCCATCCTGAGTGCAGTGCTTTCAAGAGGTATAGCCCAGATTTAAGCCGCAATATCACATTGCAAAGGGCTCCCAATTTGCTTAGGCAAAGCCTGTTCAAGAGATCGCTTGCATTCTACAGAAACTTAAACAACGCGAGAATGAGAGAACTTAGTTTCCAAACAAATCGTCCCACTACTACTCAGCTACATCATATGATATCAGAGCGAAGAAGACGCGAAAAacttaatgaaaattttcaagctcTTAGAGCACTACTTCCTCCAGGAACTAAGaaagaCAAAGCTTCAATACTTACAGCAGCCAAGGAGACATTGAGCTCTTTGAGGGCTGAAATTGAGAAGCTTAGCAAAAGGAACATGCAGCTAGAGTCAGTTTTGCCCGCCAATGAAACTAATGCTGAAGCAACCAAAACTAGTACTTTCTCTGGAGAAAGACTAAGTGTTCAAGTTTTGCATGTTCCGGAATCAAGCTCGTCACAAGAGCGAATAATAGACTTGCAAGTACTGGTAAGAGGACAAAACTCGCAAGCTGACATATTGATTCGCTTATTGGAATTCATTAAGCAGGATCAGAACGTGAGCATGATTTCCATAGATGCTAACACCCATATGGCAGAAGGGATTGCTCTCAATCAAGTTCATTTTAGACTAAAGGTTGAGGGAAGTGATTGGGACGAGTCTGCCTTCCAGGAAGCAGGGAGAAGAGTGGTTGCTGACCTGGCACAGTG 1559 0.4291 MDTVFSLPEAVRADFLRTVAQSCGCAYICVWSYDSRFPNRLLFLDGLYNQPSSSLVNAVAQSLFNEQRGLQFDVTGNHVPGLAFRNNRVFQFGQGDLLTLAWTDIQKRFYQEARIETAVFMGCNTGEIELGFSTMSQDYIQTALRNIFPADDLSRSQPQLIDQNPPSSSSSSLRSLSNSPEYSSLLFNIPGAAHYPETLGGVPTMQPARPVSTSTANSPHQAAIRALAQASQIQLPTPENENDAIMRAILHVISSDAPSSSTSHHQTHLNLPYPSVVHPECSAFKRYSPDLSRNITLQRAPNLLRQSLFKRSLAFYRNLNNARMRELSFQTNRPTTTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILTAAKETLSSLRAEIEKLSKRNMQLESVLPANETNAEATKTSTFSGERLSVQVLHVPESSSSQERIIDLQVLVRGQNSQADILIRLLEFIKQDQNVSMISIDANTHMAEGIALNQVHFRLKVEGSDWDESAFQEAGRRVVADLAQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00593 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Bva06g00593 519 Gene3D - 335 410 IPR036638 GO:0046983
Bva06g00593 519 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 517 - -
Bva06g00593 519 CDD bHLH_AtbHLH_like 341 393 IPR045239 -
Bva06g00593 519 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 517 IPR044658 -
Bva06g00593 519 SMART finulus 342 391 IPR011598 GO:0046983
Bva06g00593 519 MobiDBLite consensus disorder prediction 156 176 - -
Bva06g00593 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 402 IPR036638 GO:0046983
Bva06g00593 519 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Bva06g00593 519 Coils Coil 342 362 - -
Bva06g00593 519 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00593 Bva-Chr6 6102103 6105696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00593 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.324 5.86e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva06g00593 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00593 - - gmx:100807098 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01047 05 5392082 5395200 Bva06g00593 06 6102103 6105696 BWGD
Bva06g00593 06 6102103 6105696 Bva06g00593 06 6102103 6105696 ECH