Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00589 ATGGAAGAAACTCCATTAGGAAACTCAGAGCCCACTCCCTCTGGAAATCTTGTTGGTTTCCCTCGTTACCGTCGATCTCATCTAAGGGGCGAAACTTATCGCACCCTGGTTTGTATCCTATCTCACTGCTATGGCAAATCCCAGCTTTCTCATATCAGTCAAATTCGTAACGTAACTGAGAACTTGAACAATAAAGATAATGGCGATGATGGAATGGGGCAAGCAAGCCTGGAAAACGAGTCTGAATCtgttaaatttgttattcCTGAAATTACTGACTGCAAGGATAATGTACACGAGAAAGAAACACATTATGAGAACTTAGAAGTGGTTGGATTGCAGGGCGAAGAGTGTAGTGACACTAAGATGGCTATAAACGAAATAGAGCTTATGATGGAAGTAGAGAACGATGAGGACTCTTCAAGAAGACAGGAAATGATGATCTGTGAGGATAAAGAGGCGACGTCTAAGCAAGCTAAAGTTGCTAGTAAGGAACAGCAACTGATTGATGAATTGGAACAGATTGTGCAAGGAACTGAAAAACTTGGTTGTGAAAATGGCTTGACAACCGCCTTGAGCTTGGgattaaatgaaaaacaaaatagcagTAGTGAAGTTGAATTGATGGATAACCTTGTGGAACATGTTGAATTTCAGCAATCTGATATGAACAAATCTAGAACTGCAAGTGAGCCGCGACTAGAAGGACTCAATCAGGATGCCCCGCCAAGCTTTGGTTCATATTCACTTGCTGAGGTTTCAAAATCCAGCATGCAGGAACAAAGCTCTTTATCAGGACTTGGAAAATCAAGTACAAGGCAGGAGATACAGCCAAATGAAATGGAATTCACAAAACCTATCTGTAGTTCAGTTGGTTCTCTACCTGCTATAGAAGAGGTTCAGTTTGAGAAGGAAGAACAGAGTTGTCTAAAGGTTGTTGAAGAAATGCAAGTTTCTTTGGATCAGGATATGATTGATGAAGTGTTGAATTTAAGTAACTTTGATGGAGACAAGTCATTGCTAGACACTGGTGGCTTGGAAGCCAAACAGGGAATGCAGCATGATGAAGAGCaattagagaaattattttgtgtcAATGATGGAGCAAATTCTTCCAGTCATGTGATTGAGGAAGGAGACATAGAAGAGGGAGAAATTTCTGATGACTATGGGACAAATGGCAATTTGTTTGATATGCCTTCTGCAGATTCTTTGATGTTGCAGCAGAAGAAAGTAGGAAACGTtcagaaacacaaaaatttaattgaaaaccTAGTCTATCCTAGTAACATACCATATggagaaaaacaagaagatcAACCTGTCCGTAGCAGCAAACTAGTGGAACTTAGGGAAATTGATGAAGTAGCTACCTCAAAAGAAACTATTAAATCTGAAGATGCAGGTAAGTATTATTCTATGCAAGAGACTGGAAAAAGCAACTGTAAAGACATTAGATGTAAGGAGGTCACTGGAGATCATGCAAACTCATCTAAAGTAGAGCTGAAGGCTGGTGTCAACAGTAAGAAAAAGCGTGGTCCTGTTTCTGAGGAAAAGAAAGCTAAAAAGAAGgaaaagaaacgaAAGAAGCGGGCAGAGATGAACAGGAAACTTGGTGTCAAAAGGTTGAAGCTGCCATTAATAGTGAAACCAAAAGCTATTGTATATTGCCGCCATTTTCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTTTCTCATGATACGGTGCCTTTGACAAAATCCAAGCCATGCTGTCATTTTGCACGTCAAACTTGCATGAAGGGGGATGACTGCCCATTTGATCACCAGCTTTCAAAGTATCCTTGTAGCAATTTTGCTTCCAGAGGTTCTTGTAGTAGAGGTGATGCTTGCATGTTCTCACACCAGATGCCAACCAAGGAAGATATTCCTACTTCCCCAAATGATTGCAGAGCAGACACAAAATCTCCCATGTTGCCAGTCAATACAAATTTCAGTAAGCCACTGAAGATCAGTGGTACTAGTGCTTCTCAGCAAAACCAGTTCTCTGGATCTAGTGGAATTCATTCTTACATCAGTGGAAAACAAGAGGAAGCAAGCACTGAGCagaaatcatttaaaatgGCACCCAAAGGAGTTAGTTTCATCAATGTTGGAAAATCACCATTGCTCAACCCTGGTGCGCTTAAACAAGGCACAGTCACTCCAAACAGGGGGGGTGCTGCCCAAATTGGAACCGCTACAGACCAAAGTGCATCTGTCACTTCTCAAAACTTGGAAGTTTCCAAAAAAAAGCCGGTAGTAGCCCCCAGgggaattaattttctttcgtTTGGCAAAGGCTGTGTAACTGGTTCCAAAATTTCTGATAGCTCGTGCTTGAATAGGGAAAATATTGTCAAGTTCCCTCGATTAGGCAATTTCGATTTGCTTGAGcagttaaatttatctctaAAAAATGATGATAGCAGCAAAGTTGGCATTGGGACAAAGCAACAAGTCCAGCAGACCGTTCTATGCTCAAATGACATTTTAAAGGATACTCAATCTGAGGCAAAAGCAATGGATCCTAATATTCCTAGAAAAGCTTCAATAGATGTATCTACCACTGATAATTCTCAGGGCCAGAGTTTAACTAGATGTGTTCAAGAGAGTGTTAAAGCATCTAACAATTCTCAGACTTCAATTGTATCCTTATCTATGCCTCCAGTGTCTCCACTTGCGTTAGGCCAGTCTTCAGAACGCCTAACTTCGGGACATTGTAAAAATGCATCAAAGTCGGCCCATAAGGTACTCATGTCAACCTTAGCATTTGCAGCAGAACATGAATCAGGTATTAAGATGAAATCTTCTACTGGTTCTCCAGCTGTAAAGTCGGAGAACAGAAAGGAGATACTATA 2885 0.3917 MEETPLGNSEPTPSGNLVGFPRYRRSHLRGETYRTLVCILSHCYGKSQLSHISQIRNVTENLNNKDNGDDGMGQASLENESESVKFVIPEITDCKDNVHEKETHYENLEVVGLQGEECSDTKMAINEIELMMEVENDEDSSRRQEMMICEDKEATSKQAKVASKEQQLIDELEQIVQGTEKLGCENGLTTALSLGLNEKQNSSSEVELMDNLVEHVEFQQSDMNKSRTASEPRLEGLNQDAPPSFGSYSLAEVSKSSMQEQSSLSGLGKSSTRQEIQPNEMEFTKPICSSVGSLPAIEEVQFEKEEQSCLKVVEEMQVSLDQDMIDEVLNLSNFDGDKSLLDTGGLEAKQGMQHDEEQLEKLFCVNDGANSSSHVIEEGDIEEGEISDDYGTNGNLFDMPSADSLMLQQKKVGNVQKHKNLIENLVYPSNIPYGEKQEDQPVRSSKLVELREIDEVATSKETIKSEDAGKYYSMQETGKSNCKDIRCKEVTGDHANSSKVELKAGVNSKKKRGPVSEEKKAKKKEKKRKKRAEMNRKLGVKRLKLPLIVKPKAIVYCRHFLKGRCHEGDKCKFSHDTVPLTKSKPCCHFARQTCMKGDDCPFDHQLSKYPCSNFASRGSCSRGDACMFSHQMPTKEDIPTSPNDCRADTKSPMLPVNTNFSKPLKISGTSASQQNQFSGSSGIHSYISGKQEEASTEQKSFKMAPKGVSFINVGKSPLLNPGALKQGTVTPNRGGAAQIGTATDQSASVTSQNLEVSKKKPVVAPRGINFLSFGKGCVTGSKISDSSCLNRENIVKFPRLGNFDLLEQLNLSLKNDDSSKVGIGTKQQVQQTVLCSNDILKDTQSEAKAMDPNIPRKASIDVSTTDNSQGQSLTRCVQESVKASNNSQTSIVSLSMPPVSPLALGQSSERLTSGHCKNASKSAHKVLMSTLAFAAEHESGIKMKSSTGSPAVKSENRKEIL 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00589 961 MobiDBLite consensus disorder prediction 504 521 - -
Bva06g00589 961 MobiDBLite consensus disorder prediction 666 691 - -
Bva06g00589 961 Coils Coil 162 182 - -
Bva06g00589 961 SUPERFAMILY CCCH zinc finger 553 576 IPR036855 GO:0046872
Bva06g00589 961 MobiDBLite consensus disorder prediction 1 15 - -
Bva06g00589 961 ProSiteProfiles Zinc finger C3H1-type profile. 605 633 IPR000571 GO:0046872
Bva06g00589 961 SMART c3hfinal6 608 632 IPR000571 GO:0046872
Bva06g00589 961 SMART c3hfinal6 551 577 IPR000571 GO:0046872
Bva06g00589 961 SMART c3hfinal6 580 606 IPR000571 GO:0046872
Bva06g00589 961 ProSiteProfiles Zinc finger C3H1-type profile. 580 604 IPR000571 GO:0046872
Bva06g00589 961 Gene3D - 549 607 - -
Bva06g00589 961 MobiDBLite consensus disorder prediction 242 280 - -
Bva06g00589 961 ProSiteProfiles Zinc finger C3H1-type profile. 551 578 IPR000571 GO:0046872
Bva06g00589 961 Pfam CCCH-type zinc finger 557 576 IPR041367 -
Bva06g00589 961 MobiDBLite consensus disorder prediction 218 280 - -
Bva06g00589 961 SUPERFAMILY CCCH zinc finger 609 635 IPR036855 GO:0046872
Bva06g00589 961 MobiDBLite consensus disorder prediction 1 21 - -
Bva06g00589 961 MobiDBLite consensus disorder prediction 218 233 - -
Bva06g00589 961 MobiDBLite consensus disorder prediction 498 533 - -
Bva06g00589 961 MobiDBLite consensus disorder prediction 940 961 - -
Bva06g00589 961 Coils Coil 515 535 - -
Bva06g00589 961 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 354 956 IPR045124 GO:0003723|GO:0045892
Bva06g00589 961 PANTHER PROTEIN SUPPRESSOR OF SABLE 354 956 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva06g00589 zf-CCCH 0.00027 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00589 - - aprc:113854397 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00589 06 6080604 6086398 Bva06g00589 06 6080604 6086398 ECH