Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00587 ATGGACTCTAGACTTGGGTTCTCAGATTCAAACGAGATCAGCAATAGCAGTGGTATATGCTGTGTAGCTACCAATGGTGAAACCCATTCAACTCACGAGCTTCCAGCTCCGGGTGTTGCAGCTCTTAGCCGCTTGTCTGAGAACCTTGGATCAATCTTCGAGACccaagaatttgatttttttagcGATGCCAAAATGGTCCTCGAAGATGGTCGAGAAGTTCCCGTACATCGCTGCATTCTATCGGCGAGAAGTGCTTTCTTCAAGAATGTATTTTCGAGTTCGGCTGCTAAAGAGAGATGTGGCAAGTTCGAATTGAAGGAATTGGCCAAGGATCATGGAGTTGGGTTCGATGCAGTTGTGGCTGTTCTGGGCTATTTGTATAGTGGGAGAGTGAAGTCGTTGCCCAAAGGTCTTTGTGTCTGTGTAGATGATGATTGTTCACATTTTGGGTGTAGACCTGCTGTGGATTTCATGGTTCAAGTGCTTTATGCTTCCTATATCTTTCAAATATCTGAGCTGGTTGCTCTTTATCAGAGACATCTACTAGACATCCTTGACAGGGTTGCACCAGATGACATTTTGGTGGTTCTTTCTGTTGCAAATATATGTGATAAAATGTGTGAGAGACTGCTGGTCAGGTGTATCGAACTGATGGTTAAATCTGATGTTGATGTTATTACACTTGATAAAGCACTGCctcaaaatattgtaaaacGAATTATGGATAAACGTTTAGAGCTTGGCTTGGACAGGCCCGAAAGCATCAGTTTTCCAGAAAAACATGTCAAAAGAATACACAGGGCTCTTGATTCGGATGATGTAGAGTTAGTCCGAATGCTCTTGAAAGAAGGGCATACTAATCTAGATGATGCTCATGCTCTTCACTATGCTGTTGCATACTGCGATGCAAAGACCACAACTGAGCTTCTTGATCTTGGACTTGCCGAtgttaatcataaaaattctAGGGGCTACACAGTGCTGCATGTTGCTGCCATGAGGAAAGAGCCCAAGATTATAGTTTCTCTCTTGACAAAGGGAGCCCAGCCTTCGGATCTGACTTTGGATGGTAGGAAAGCCCTTCAGATTTCCAAACGTCTCACTAAGGCTGTTGATTACTATAAATCTACAGATGAAGGATCTTCCAAGGATCGATTGTGTATAGAGATATTGGAGCAAGCTGAAAGAAGAGAGCCTTTACTCGGAGAGgcatctctttctcttgcaATGGCAGGAGATGATTTGCGTATGAAAATGTTGTACCTTGAAAATAGAGTTGGACTGGCGAAACTTCTGTTTCCCATAGAAGCAAAAGTTGTGATGGATATTGCTCAAGTTGATGGCACTTCTGAGCTTCCATTAGCAGATCTCTGCTCTTCAAATAGTACTAAACGGTCAACTGTAGACTTAAATGAGGCACCTTTCAAAATTAAGGAGGAGCATCTGATTAGGATGAGGGCACTGTCTAGAACTGTGGAGTTAGGGAAACGCTTCTTTCCACGTTGCTCAGAAGTGCTTAATAAGATAATGGATGCTGATGACCTGTCTCAGCTTGCATGCATGGGTAATGATACACCAGAAGAACGATTGGTGAAGCGGCGAAGGTACACGGAACTCCAAGAAGTTCTAAGCAAAGCGTTCGATGAGGACAAAGAGGAGTTTGATAGGTCTACCATgtcatcatcttcatcctcaACATCAATAGGAGTAGCGAGGCCTAATGGCAAGCTAGCCATGAAGAACta 1748 0.4148 MDSRLGFSDSNEISNSSGICCVATNGETHSTHELPAPGVAALSRLSENLGSIFETQEFDFFSDAKMVLEDGREVPVHRCILSARSAFFKNVFSSSAAKERCGKFELKELAKDHGVGFDAVVAVLGYLYSGRVKSLPKGLCVCVDDDCSHFGCRPAVDFMVQVLYASYIFQISELVALYQRHLLDILDRVAPDDILVVLSVANICDKMCERLLVRCIELMVKSDVDVITLDKALPQNIVKRIMDKRLELGLDRPESISFPEKHVKRIHRALDSDDVELVRMLLKEGHTNLDDAHALHYAVAYCDAKTTTELLDLGLADVNHKNSRGYTVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYKSTDEGSSKDRLCIEILEQAERREPLLGEASLSLAMAGDDLRMKMLYLENRVGLAKLLFPIEAKVVMDIAQVDGTSELPLADLCSSNSTKRSTVDLNEAPFKIKEEHLIRMRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLACMGNDTPEERLVKRRRYTELQEVLSKAFDEDKEEFDRSTMSSSSSSTSIGVARPNGKLAMKN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00587 582 Pfam BTB/POZ domain 56 182 IPR000210 GO:0005515
Bva06g00587 582 SMART BTB_4 62 186 IPR000210 GO:0005515
Bva06g00587 582 PANTHER REGULATORY PROTEIN NPR3 3 581 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bva06g00587 582 SMART ANK_2a 290 320 IPR002110 GO:0005515
Bva06g00587 582 SMART ANK_2a 324 353 IPR002110 GO:0005515
Bva06g00587 582 SMART ANK_2a 261 289 IPR002110 GO:0005515
Bva06g00587 582 ProSiteProfiles Ankyrin repeat region circular profile. 324 350 - -
Bva06g00587 582 SUPERFAMILY POZ domain 52 184 IPR011333 -
Bva06g00587 582 Pfam Ankyrin repeats (many copies) 294 338 IPR002110 GO:0005515
Bva06g00587 582 PANTHER REGULATORY PROTEIN NPR2 3 581 - -
Bva06g00587 582 SUPERFAMILY Ankyrin repeat 265 366 IPR036770 -
Bva06g00587 582 Gene3D - 236 397 IPR036770 -
Bva06g00587 582 MobiDBLite consensus disorder prediction 549 582 - -
Bva06g00587 582 ProSiteProfiles Ankyrin repeat profile. 324 356 IPR002110 GO:0005515
Bva06g00587 582 Gene3D Potassium Channel Kv1.1; Chain A 38 221 IPR011333 -
Bva06g00587 582 ProSiteProfiles BTB domain profile. 62 136 IPR000210 GO:0005515
Bva06g00587 582 CDD BTB_POZ_NPR_plant 44 186 - -
Bva06g00587 582 Pfam NPR1/NIM1 like defence protein C terminal 366 567 IPR021094 -
Bva06g00587 582 Pfam Domain of unknown function (DUF3420) 223 267 IPR024228 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00587 Bva-Chr6 6071203 6075004 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva06g00587 NPR1_like_C 1.1e-87 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00587 K14508 - tcc:18588372 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00587 06 6071203 6075004 Bva06g00587 06 6071203 6075004 ECH