Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00580 ATGCCATTTCAATCAATGTATGACACGCGGCAAAGAGGCAGGGGTATATTCGGAAATCAAGAAAAGAGCACACTTCCGAAGGGTATAATCCTTTGTCTCGTCGCCTTCGCTTTTCTCCGATCAACCAGCTTTCGTCATCGAAAAGTCATGGCAGGCCTGTCACCTGAAGGTTCACAGTTCGATGGTAAACAGTATGATGCCAAAATGTCCGATTTACTTACAACTGATGGACAGGATTTCTTTACATCTTATGATGAGGTTTACGATAGTTTTGATGCTATGGGCTTGCAAGAGAATCTCCTAAGAGGCATTTATGCATATGGTTTTGAGAAACCATCAGCTATTCAGCAAAGGGGAATCGTTCCATTCTGTAAGGGACTTGATGTCATTCAACAGGCTCAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCGGGGATTCTGCAGCAACTTGACTACAGTTTGACAGAATGTCAGGCCTTAGTTTTAGCACCAACTCGAGAGCTTGCTCAGCAGATTGAAAAGGTTATGCGAGCACTTGGAGATTATCTTGGTGTCAAGGTGCATGCTTGTGTGGGTGGAACCAGTGTTCGTGAAGACCAACGCATTCTATCAAGTGGTGTTCATGTTGTCGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGTAGGCAGTCACTTCGACCAGATTACATAAAGATGTTTGTATTGGATGAAGCAGATGAAATGCTTTCTCGAGGTTTTAAAGACCAgATCTATGATATATTCCAGCTACTGCCAGGCAAGATTCAGGTGGGAGTTTTCTCCGCTACAATGCCTCCTGAGGCCCTTGAGATCACGAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTAAAGCGTGATGAGCTCACATTAGAGGGTATCAAACAATTTCATGTCAATGTTGAAAGAGAGGAATGGAAGTTGGACACACTCTGTGATCTTTATGAGACATTGGCCATCACTCAGAGTGTCATTTTTGTCAACACCAGAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGAGACCACACAGTCTCTGCGACCCATGGAGACATGGACCAGAATACCAGAGACATCATCATGCGTGAATTTCGTTCTGGATCTTCTCGTGTTTTGATTACAACTGACCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCTcttgttataaattatgatcTCCCAACACAGCCTGAGAACTATCTCCACCGTATTGGACGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCCATCAACTTCGTGACAAAGGACGATGAGAGAATGCTCTATGACATCCAGAGGTTTTATAATGTGATAATTGAAGAGCTGCCATCAAATGTTGCCGAACTCCTCTG 1388 0.4373 MPFQSMYDTRQRGRGIFGNQEKSTLPKGIILCLVAFAFLRSTSFRHRKVMAGLSPEGSQFDGKQYDAKMSDLLTTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLYDIQRFYNVIIEELPSNVAELL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00580 462 SMART ultradead3 108 305 IPR014001 -
Bva06g00580 462 Gene3D - 298 462 IPR027417 -
Bva06g00580 462 Pfam DEAD/DEAH box helicase 114 275 IPR011545 GO:0003676|GO:0005524
Bva06g00580 462 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 236 244 IPR000629 -
Bva06g00580 462 SMART helicmild6 342 423 IPR001650 -
Bva06g00580 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 462 IPR001650 -
Bva06g00580 462 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 72 462 - -
Bva06g00580 462 CDD SF2_C_DEAD 302 432 - -
Bva06g00580 462 PANTHER RNA HELICASE 72 462 - -
Bva06g00580 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Bva06g00580 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 443 IPR027417 -
Bva06g00580 462 Gene3D - 79 297 IPR027417 -
Bva06g00580 462 CDD DEADc_EIF4A 93 291 - -
Bva06g00580 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 290 IPR014001 -
Bva06g00580 462 Pfam Helicase conserved C-terminal domain 315 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00580 Bva-Chr6 6035004 6038259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00580 50 462 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00580 K03257 - gmx:100786735 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01058 05 5448082 5451123 Bva06g00580 06 6035004 6038259 BWGD
Bva06g00580 06 6035004 6038259 Bva06g00580 06 6035004 6038259 ECH