Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00558 ATGGACGGAGGAGCTCCGTACAACCCTCGCACGGTGGAGGAGGTTTTTAGAGACTTCAAAGGCCGTCGGGCCGGCATGATCAAGGCCCTCACTACTGATGTTGAAGAATTCTACCAGCAGTGTGATCCTGaaaaggaaaatctcTGCCTGTATGGCTTCCCTAATGAAACATGGGAAGTCAACTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCCGAGCCTGCTTTGGGAATAAACTTTGCTAGGGATGGGATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATGCGTGGTTACTTGCAGTGGCTTTCTATTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCGACAATATTTGAGGTTGTGACTGGAACTGCAAAGAAACAAGTAAAGGAAAAGTCATCAGTTTCAAATCACACCAGCAACAAATCAAAATCTGGTTCAAAAGGGCGAGGACCTGATTCAGTAAAGAATTTAAAGCAAGCCAAGGATGAGGATGAGGGATTGGATGATGAAGAGGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCATGTGGTGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGCGTGAAGATCACTCCTGCCAGGGCCGAGCACATCAAGCAGTATAAGTGCCCCTCATGCAGCAACAAAAGAGCACGGCCTTG 752 0.4628 MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNETWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGTAKKQVKEKSSVSNHTSNKSKSGSKGRGPDSVKNLKQAKDEDEGLDDEEEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00558 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Bva06g00558 250 CDD PHD_AL_plant 196 246 IPR044104 -
Bva06g00558 250 Pfam PHD-finger 197 246 IPR019787 -
Bva06g00558 250 SMART PHD_3 196 244 IPR001965 -
Bva06g00558 250 Coils Coil 171 191 - -
Bva06g00558 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Bva06g00558 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Bva06g00558 250 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 250 - -
Bva06g00558 250 MobiDBLite consensus disorder prediction 145 190 - -
Bva06g00558 250 MobiDBLite consensus disorder prediction 145 166 - -
Bva06g00558 250 PANTHER CPG BINDING PROTEIN 4 250 IPR045104 GO:0006355|GO:0042393
Bva06g00558 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bva06g00558 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00558 Bva-Chr6 5904052 5908221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00558 1 249 Alfin-like Transcription Factor Family AT3G42790 76.096 4.08e-126 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva06g00558 Alfin 1.4e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00558 - - rcu:8272513 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00558 06 5904052 5908221 Bva10g00524 10 4965407 4969085 ECH
Bva06g00558 06 5904052 5908221 Bva06g02264 06 14745355 14748813 ECH
Bva06g00558 06 5904052 5908221 Bva06g00558 06 5904052 5908221 ECH