Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00556 ATGCCGTACCAGATCCCAAAGgAAACTTTGAAGGTTTCCAAAATTAAGGTTGCGATATTTAACACTGTACTCAAAGTATGGCCAACTCTAATGTTGAATCGTCCTGATATTGAGTTGAATTGTCCTCAAGTTGATCACTCAATGGCTCGTGTTCCGTATCCTTATGCTGATCATTTTTTTGGTGGTTCATTAGTTGCATATGGACCACAGGTTATTAATCAACCGCAAGTGGTGACCCAGATGTTGGGATTGTCATCCACAAGAGTTGCATTACCACTTGATCTTGCAGAAGATGGACCCATTTATGTGAATGCAAAACAATATCACGGTATACTGAGGAGGCGACAATCCCGGGCAAAGCTTGAGGCTCAAAACAAACTCATAAAAAACCGTAAGCCTTATCTTCATGAGTCTCGGCATCGGCACGCTCTAAATAGGGTTAGGGGATCTGGGGGACGCTTCCTCAGCACAAAACAGCTTCAAGAGTCTAATCCAGAACTTGTCACCGGCACTCATTCTGGTTCAGATTGTGTCAACATATATCAAAAGAAGGGTAAGTCAGAGGTGGAAAGTCATCCATCAAGAACCGGCGAAAATGCATCTTCTATTACAGCTTGCTCTGACGTGACAAGCTTGTCCAGTAACGGTGTCAATTTTAGGCAGCCAGAGTGCAAGTTCTTGGGGAGCTCTTCAAATCTTGGTGGAGCATCGCAGTGCAGTGGGGGACTCACCTTTAATGGAACCCAACAGCAACGTGCTTCAGTGGTCCGGTG 773 0.4476 MPYQIPKETLKVSKIKVAIFNTVLKVWPTLMLNRPDIELNCPQVDHSMARVPYPYADHFFGGSLVAYGPQVINQPQVVTQMLGLSSTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQLQESNPELVTGTHSGSDCVNIYQKKGKSEVESHPSRTGENASSITACSDVTSLSSNGVNFRQPECKFLGSSSNLGGASQCSGGLTFNGTQQQRASVVR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00556 257 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 100 154 IPR001289 GO:0003700|GO:0006355
Bva06g00556 257 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 26 243 - -
Bva06g00556 257 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 243 IPR001289 GO:0003700|GO:0006355
Bva06g00556 257 PRINTS CCAAT-binding transcription factor subunit B signature 131 154 IPR001289 GO:0003700|GO:0006355
Bva06g00556 257 PRINTS CCAAT-binding transcription factor subunit B signature 100 122 IPR001289 GO:0003700|GO:0006355
Bva06g00556 257 ProSitePatterns NF-YA/HAP2 subunit signature. 102 122 IPR018362 GO:0003677|GO:0016602
Bva06g00556 257 ProSiteProfiles NF-YA/HAP2 family profile. 97 157 IPR001289 GO:0003700|GO:0006355
Bva06g00556 257 Gene3D - 97 159 - -
Bva06g00556 257 SMART cbf3 96 157 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00556 Bva-Chr6 5894042 5896878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00556 47 163 CCAAT-HAP2 Transcription Factor Family AT1G17590 63.025 9.50e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva06g00556 CBFB_NFYA 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00556 K08064 - gmx:100793856 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00556 06 5894042 5896878 Bva06g00556 06 5894042 5896878 ECH