Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00552 ATGGTTGATGTGCTAACCTCCTTCCCAATCTCACCTattcctcctcctccttcttcatcttcttccccAAAATCCAACATGCCCATGTTGTACTATGGCCTTGTAGTGGTGGGAACCGCTGCTATAGTGTTGGCTATATACAACATATTCATCATCAAATGGTGTAGCAGGAGTCAAATGCAGTCGCAGGCTTCTGGGTCAAATCAAATGGCGGTGGAGGTTGCAACAGGTAGGAGTTTTGAGAGCTCAAAGAGGAACCTGCTTTCAAGCTTCAAGTACAAGAAAGAGCAAGAGCAGGGTGGTGATGGCGCTGCCGCCGGGGATTATGAATGCCCAGTTTGTTTATCAGTTTTTGAAGAAGGGGAGCAAGTGACTAAACTGCCACGCTGCAACCACTCCTTCCATGCTCTTTGTATAGACATGTGGCTTTACTCTCACTTCGATTGCCCAATTTGTCGAACACCTGTTGGGCCTTTTGGTGGGCGCCGTTTTCTGCCGGAGAGTCAGTCGCCGGCGGAGAATTCTCGTGAAGGGTTGATGGAATCCGGTGGGGTCAGTTG 560 0.4643 MVDVLTSFPISPIPPPPSSSSSPKSNMPMLYYGLVVVGTAAIVLAIYNIFIIKWCSRSQMQSQASGSNQMAVEVATGRSFESSKRNLLSSFKYKKEQEQGGDGAAAGDYECPVCLSVFEEGEQVTKLPRCNHSFHALCIDMWLYSHFDCPICRTPVGPFGGRRFLPESQSPAENSREGLMESGGVS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00552 186 Pfam Ring finger domain 110 153 IPR001841 -
Bva06g00552 186 MobiDBLite consensus disorder prediction 163 186 - -
Bva06g00552 186 SUPERFAMILY RING/U-box 110 159 - -
Bva06g00552 186 SMART ring_2 111 152 IPR001841 -
Bva06g00552 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Bva06g00552 186 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 181 IPR044675 -
Bva06g00552 186 CDD RING-H2_EL5_like 110 153 - -
Bva06g00552 186 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Bva06g00552 186 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00552 Bva-Chr6 5875992 5877532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00552 34 156 C3H Transcription Factor Family AT5G17600 37.226 1.24e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00552 - - aprc:113852327 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01091 05 5601354 5602418 Bva06g00552 06 5875992 5877532 BWGD
Bva06g00552 06 5875992 5877532 Bva06g00552 06 5875992 5877532 ECH