Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00549 ATGTCGGTGAATCTCACGCCGAACGCGATCCCGGCGATTTTCGCCGGCGACGTCAACTCGAAGCCACTGGTACAGGTCTTGGATATCAAGCTGATTTCGAATAAGGCGCATCAGGAGAGGTACCGGCTTTTGCTTTCTGACGCCGTTTCGACTCAGCAGGCCATGCTCGCGACTCAACTCAATGACCGAGTCAGAACCGGACGAGTTAAGCCTGGTTCCGTTGTTCAGTTGATTGAGTATATCTGCAGCCCTGTGCAGAACCGCAAGATTATTGTGATACTCAACATGGAAACTATAATACCAGATTGTGAGATCATTGGGAATCCAAAGTCATTTGGAGAATCTGATTTAATAGCTCCGAAAGCATTACCCAATATGCAGCAGTCGTCCAAGgttaataataatcatttgGCTGCTCAAAATCCAAGTCATAATGTGCAGAGTTTCCGACCAACCGTTCAACCTCCTTACCAACCACCTCCAGTCTATAAAAATCGTGGTGCAATTTTGAAGAATGAGGCACCAGCACGAATCATTCCTATAGCTGCTTTAAATCCTTATCAGGGCCGGTGGGCTATCAAGGCAAGAGTAACTGCAAAAGGGGATCTGCGCCGCTATAACAATGCTCGCGGAGATGGGAAGGTCTTCTCATTCGACCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACTTGCTTCAATGCTGTTGTCGATCAATTCTATGATGCAATTGAGGTAGGGAAAGTTTACTTGATATCTAAAGGTAGCTTAAAACCTGCACAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATACTTTTGGATTCAAATTCAACTGTGGAGCTTTGCCATGATGAAGATGGTTCTATACCTAGACAACAGTTCTCCTTCAGGCCAATCAGTGAAATTGAGAATGTTGAGAATAACTCCATACTTGATGTGATTGGGGTTGTGGTATCTGTGAATCCATCCGTTACTATCCTGAGAAAGAATGGAATGGAAACCCAGAGAAGAGTTTTGAATCTAAAGGACTGGTCTGGCAGGAGTGTCGAGCTAACCTTTTGGGGTGATTTCTGCAATAGGGAGGGTCAGAAGTTGCAAGAGATGGTCGATACAGGTTTTTTCCCTGTTTTGGCAGTCAAAGCTGGGAAGGTTAATGATTTCAGTGGAAAATCTATAGGGACTATTTCTTCTACACAGCTCTTTATAAACCCTGATTTCCCGGAGGCTCATAGATTAAGAGACTGGTTTGATCAAGGGGGAAAGGATGCTGCTTCTCTGTCCATTTCTAAGGAGATTGTTCCTGGAGTATCTAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGACGATCAGATAAGCCAGACTGGATAACAGTGAGGGCAACCATATCTTTCATCAAGACAGATACATTTTGTTACACTGCCTGCCCCCTCATGATTGGAGATCGACAATGCAATAAGAAAGTGACAAGGTCAGGAAACACAAGATGGCACTGTGATAGATGCAATCAAGTGTTTGAGGAGTGTGATTACCGATATCTTCTTCAAGCCCAAATTCTGGATCATACAGGAATAACTTGGGTAACTGCTTTCCAGGAATCCGGAGATGAGATTTTGGGTTATTCAGCAAAAGAGCTGCACTTGTTGAAATATGAACAGCAGGATGATGAGAAGTTCAGTGAAATAATCCGGAGCAGCCTCTTCAATCAATATTTGTTCAGGCTGAAAATCAAAGAGGAATTATATGGTGATGAACAGAGGGTGAAGATTACCGTAGTCAAGGCAGATAAGGTGAATTATACTCCAGAGAGTAGATATATGcttgatttgatttcaaagTTTTGCAGGTA 1871 0.427 MSVNLTPNAIPAIFAGDVNSKPLVQVLDIKLISNKAHQERYRLLLSDAVSTQQAMLATQLNDRVRTGRVKPGSVVQLIEYICSPVQNRKIIVILNMETIIPDCEIIGNPKSFGESDLIAPKALPNMQQSSKVNNNHLAAQNPSHNVQSFRPTVQPPYQPPPVYKNRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDQFYDAIEVGKVYLISKGSLKPAQKNFNHLKNEWEILLDSNSTVELCHDEDGSIPRQQFSFRPISEIENVENNSILDVIGVVVSVNPSVTILRKNGMETQRRVLNLKDWSGRSVELTFWGDFCNREGQKLQEMVDTGFFPVLAVKAGKVNDFSGKSIGTISSTQLFINPDFPEAHRLRDWFDQGGKDAASLSISKEIVPGVSKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWHCDRCNQVFEECDYRYLLQAQILDHTGITWVTAFQESGDEILGYSAKELHLLKYEQQDDEKFSEIIRSSLFNQYLFRLKIKEELYGDEQRVKITVVKADKVNYTPESRYMLDLISKFCR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00549 623 Gene3D - 3 113 IPR012340 -
Bva06g00549 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bva06g00549 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva06g00549 623 CDD RPA1_DBD_A 180 283 - -
Bva06g00549 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Bva06g00549 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Bva06g00549 623 Gene3D - 177 287 IPR012340 -
Bva06g00549 623 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Bva06g00549 623 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bva06g00549 623 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Bva06g00549 623 Gene3D - 290 429 IPR012340 -
Bva06g00549 623 CDD RPA1_DBD_B 312 419 - -
Bva06g00549 623 SUPERFAMILY Nucleic acid-binding proteins 444 621 IPR012340 -
Bva06g00549 623 Pfam Replication factor-A C terminal domain 463 613 IPR013955 -
Bva06g00549 623 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva06g00549 623 Gene3D - 433 622 IPR012340 -
Bva06g00549 623 CDD RPA1_DBD_C 447 620 IPR013955 -
Bva06g00549 623 Pfam OB-fold nucleic acid binding domain 192 273 IPR004365 GO:0003676
Bva06g00549 623 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00549 Bva-Chr6 5865487 5869524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00549 26 620 Core DNA Replication Machinery Family AT2G06510 71.382 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00549 K07466 - zju:107409151 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00549 06 5865487 5869524 Bva06g00549 06 5865487 5869524 ECH