Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00548 ATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTAGCTGATGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACCAGAGAGCTTGCTGAGGATGGATACTCAGGGGTTGAGGTTAGAGTTACCCCGATGCGCACTGAGATCATTATCAGGGCCACTCGAACTCAGAACGTTTTAGGTGAGAAAGGCAGGAGAATTAGGGAGCTAACCTCAGTGGTACAAAAGAGATTTAAGTTTCCTGAGAACAGTGTTGAGCTGTATGCTGAGAAGGTAAACAACAGGGGTCTTTGCGCCATTGCACAGGCTGAGTCCCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGAGCTTGCTATGGTGTTCTGAGGTTTATCATGGAAAGTGGCGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTAAGGGCTCAAAGAGCCAAGTCTATGAAGTTCAAAGATGGGTACATGATTTCTTCTGGGCAACCAGTCAAGGATTACATTGACTCTGCAGTAAGACATGTACTCCTCAGACAGgGCGTTCTTGGTATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGAAAGCAGGGTCCCAAAACACCTCTTCCTGATATTGTCACAATCCACCCTccaaaggaggaagaagaatacAGTAGGCCAACTGCCATTATTCCAACTGATTTCAGAGGCATCTTCTCCTTAAGAATGGGTGACATGTTGAAAGCCAACCATCTGCGCGACGATGATTTTGTGGGCTATGGGCTCCCCGAGCTCGGTCACACAATGTGGTATGAAGAGGTTCTGGACGAAGATCTCAAATGGTCATTCGCTTTGAACggTGTTGTGCATGCAGGAACAAGCGATTATCAAGTTATGACTCTTTTGGACACAAGGCCCTTTGGAAAGGTTCTGATGATCGACGGAAAGCTACAGAGCGCGGAGAAAGACGAGTTCGTCTACCACGAGTGTATTGTCCACCCTGCTTTGCTAGCTCACGACGATCCAAAAGACGTGTTCATAATGGGCGGAGGCGAAGGGTCAACTGCGAGGGAGGTTCTCAAACACAGAGGTGTTCAAAAAGTCTATATGTGTGACGTCGACACTCAGGAAATCGTGCATTTCTGCCGTGAAAATCTGGAAGCCAATCGAGAGGCCTTCAACGATGACAGGCTTCGGGTTATTTACAATGATGCAGAGAATGAGCTGCGTTTATCAGATGAAAAGTGGGATATAATTGTGGGGGATTTGTGCGATCCTATCAATGGAGGACCCTGTAACCACCTCTACACCAAGTCTTTCTATCAACGAGTCTTGAAACCCAAGCTCAAAGACCGTGGCATCTTTGTCACACAAGCTGGTCCTGCGGGCGTGCTCTCTCATCACCAGGTGTTTTCGCCTATTTACCATACCATGAAGCAAGTCTTCACTTACGTGGTTGCTTACACAGCACACGTGCCTTCTTTTGCTGATACCTGTGGCTGGATAATgGGTTCGGACCATCCACTGAGCCTGGAACCTCATCTGCTGGACGATAGGATTCGCGAAAGAGTGATTGGACAGCTTCGCTTTTTAGACGGATCTTACATTGTTGCATCTGCACACCTCAATAAGGCTCTCAAGACAACGCTGATGAATGAGACTCATGTAATCTCCGAGGACAATTTGAAGTTCCTTCATGGACGTGGAGTTGCCCATAATGCTTTGCTTAATTA 1718 0.4668 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYSRPTAIIPTEYEIPVPVPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00548 239 Gene3D - 93 219 IPR036419 -
Bva06g00548 239 CDD 40S_S3_KH 15 95 - -
Bva06g00548 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Bva06g00548 239 Gene3D - 1 91 IPR015946 -
Bva06g00548 239 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Bva06g00548 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
Bva06g00548 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Bva06g00548 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Bva06g00548 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Bva06g00548 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Bva06g00548 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Bva06g00548 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00548 Bva-Chr6 5859827 5862102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00548 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.266 1.70e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00548 K02985 - mnt:21409977 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00548 06 5859827 5862102 Bva08g02096 08 13874144 13876807 ECH
Bva06g00548 06 5859827 5862102 Bva02g02238 02 22393090 22395528 ECH
Bva06g00548 06 5859827 5862102 Bva06g00548 06 5859827 5862102 ECH