Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00539 ATGAACGGAAGGAACAGGTACCCTTTTACTCCTTCACAGTGGCAAGAGCTAGAACATCAAGCTCTTGTCTACAAGTACATGGCTTCAGGTATTCCCATTCCATCTGATCTTCTCTTCAGCATCAAAAGAAGCTGCTTGGATTCGCCTCTGTCTTCAAGGCTCATGGCTCACCAGCCTCAAAACTTTGGGTGGAACTATTTGCAGATAGGTTTGGGGAGAAAGATAGACCCAGAACCAGGGAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCATACCCAGATTCCAAATACTGTGAGAGACACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCGACAAACACAAATAACCCTTCAACCCATACAATCTCATCAATCACGAAAAACAATAACCCTGCACTAACCCCGACCACTCATTCCCTCTCATCTCTCTCTTCAGTGTCCTCTGAGACCCACCATCACCACCCCCAACAATATTCTAGTTATGCTTCCCATCTTcaacagcaacagcagcagcagcagcactCCTTCCTATACTCAAGGCCTTCTTCAACTATTGGCTTGTCATTTCAAGACAACACTACTGCTCCCTTGTTTCTTGATTCTGCTTCTTACTCTCACAATAACACAGACTACAGGAGCAGATATGTTTATGGGCTGAAAGAGGATGTGGATGAGCATGCTTTCTTTACAGAGCCTTCTGGGAGCATGAGGAGCTTCTCTGCTTCATCTATGGATGATTCATGGCACTTGACACCACTGACAATgaattcttcctcttcttcaaaaCAGAGGAGTTGCTCTGCTTTATCCAATGACTACTCTCACTTGCAGCTCCAGAGCCTCAGGGACAACATAAAACAGCCAGAGCAAGATCAAAGTTGCTATATTCTGGATAGTGATATGAAATGTGAAGCATCCAAGAAATTGGAGAAACAAGAGCCTGAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCTCCCAAAAGCAGAGATTCTTGGCTTGATTTGGATGATAAATCCTCAACAACCCAACTCTCAATTTCCATACCCACCTCTACTCATGATTTTCCAACCTTCAATGCCAGAACCCAAAGAGATGGTTG 1145 0.421 MNGRNRYPFTPSQWQELEHQALVYKYMASGIPIPSDLLFSIKRSCLDSPLSSRLMAHQPQNFGWNYLQIGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTNTNNPSTHTISSITKNNNPALTPTTHSLSSLSSVSSETHHHHPQQYSSYASHLQQQQQQQQHSFLYSRPSSTIGLSFQDNTTAPLFLDSASYSHNNTDYRYVYGLKEDVDEHAFFTEPSGSMRSFSASSMDDSWHLTPLTMNSSSSSKQRSCSALSNDYSHLQLQSLRDNIKQPEQDQSCYILDSDMKCEASKKLEKQEPEKTVHRFFDEWPPKSRDSWLDLDDKSSTTQLSISIPTSTHDFPTFNARTQRDG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00539 379 PANTHER - 3 355 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bva06g00539 379 MobiDBLite consensus disorder prediction 356 379 - -
Bva06g00539 379 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva06g00539 379 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva06g00539 379 MobiDBLite consensus disorder prediction 356 372 - -
Bva06g00539 379 MobiDBLite consensus disorder prediction 122 188 - -
Bva06g00539 379 Pfam WRC 77 119 IPR014977 -
Bva06g00539 379 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva06g00539 379 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Bva06g00539 379 PANTHER GROWTH-REGULATING FACTOR 5 3 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00539 Bva-Chr6 5801973 5804171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00539 5 261 GRF Transcription Factor Family AT3G13960 41.980 5.58e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Bva06g00539 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00539 - - gmx:100783524 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01106 05 5700687 5702822 Bva06g00539 06 5801973 5804171 BWGD
Bva06g00539 06 5801973 5804171 Bva06g00539 06 5801973 5804171 ECH