Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00509 ATGGCGTCTAATACAAATGGGCTTGCAGCTGACAGTACCCTCCAGGCTATCTGCTACAAGCGTGGTTCGCTTCAGCTACTTGATCAGAGAAAGCTCCCTTTAGAAACAATTTACATAGAAATTCGGGATTCAACGGATGGCTGGAATGCCATACGGGATATGGTGGTCCGTGGAGCACCTGCTATTGCCATTGCAGGAGTGCTTTCTTTGGCTGTAGAAGTGTTCAATTCAGGGGCTTTTAATGGGTCAGTTGCTGATGCCGCTTCATTCCTTCAAAACAAATTAGAATATCTTGTCTCAAGTCGTCCAACTGCAGTGAACCTTTCAGATGCAGCAACAAAACTCAAAGAAGTTATATTGAAGGCTGCTGCTACTAGTTCAGAGGCCAGGAGTGTTTTTCAGGCATTTATTGAAGCTACTGAAATTATGCTCGAGGATGATGTGGCCACAAATAGAGCAATTGGCTCATATGGAGCTAGTTTTGTTCAGCAACATTCAGAGAAACCAAAGCTTTCTGTTTTGACCCATTGCAACGCTGGAAGTCTTGCCACAGCTGGATATGGTACTGCTCTGGGTGTGATCCGTGCACTTCACAGTGAAGGAGTTTTAGAATGGGCTTATTGCACAGAAACACGACCATTCAATCAAGGATCTAGACTTACGGCGTTTGAGTTGGTACATGAGAAGATACCCGCAACTCTTATAGCAGATTCTGCTGTAGCTGCATTGATGAAAGCTGGACGTGTAGATGCTGTTGTTGTAGGAGCTGACCGTGTTGCTTCAAATGGTGATACAGCCAATAAAATTGGAACCTATAGTGTTGCCTTATGCGCCAAGTTTCATAGTGTACCTTTTTATGTGGCTGCACCCTTAACTTCGATCGATCTTTCACTTTCTTCTGGACGAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACGCACGTGGAGGACTGGGAGAGAAAGTTGCTGCTTCTGGAATTTCGGTGTGGAACCCAGCTTTTGATATGACACCTGCTAATCTTATATCAGGGATCATAACAGAGAAGGGTGTCATTACGAAGACTGGTGCTGATACCTTTGACATAAAAGCATTCGTACAGAAGACTGGTGACCAGGCCTA 1130 0.4451 MASNTNGLAADSTLQAICYKRGSLQLLDQRKLPLETIYIEIRDSTDGWNAIRDMVVRGAPAIAIAGVLSLAVEVFNSGAFNGSVADAASFLQNKLEYLVSSRPTAVNLSDAATKLKEVILKAAATSSEARSVFQAFIEATEIMLEDDVATNRAIGSYGASFVQQHSEKPKLSVLTHCNAGSLATAGYGTALGVIRALHSEGVLEWAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAVAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHSVPFYVAAPLTSIDLSLSSGREIVIEERSPKELLNARGGLGEKVAASGISVWNPAFDMTPANLISGIITEKGVITKTGADTFDIKAFVQKTGDQA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00509 376 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 15 357 IPR005251 -
Bva06g00509 376 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 357 IPR011559 GO:0044249
Bva06g00509 376 Gene3D - 12 203 IPR027363 -
Bva06g00509 376 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 365 IPR005251 -
Bva06g00509 376 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 12 370 - -
Bva06g00509 376 Gene3D - 204 369 IPR042529 -
Bva06g00509 376 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 12 370 - -
Bva06g00509 376 Pfam Initiation factor 2 subunit family 56 356 IPR000649 GO:0044237
Bva06g00509 376 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 359 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00509 Bva-Chr6 5668145 5671598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00509 53 376 Eukaryotic Initiation Factors Gene Family AT2G05830 77.301 7.75e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00509 K08963 - gmx:100799311 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00509 06 5668145 5671598 Bva06g00509 06 5668145 5671598 ECH