Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00498 ATGCAGCAACAGAGGCTAAAACAACAGGCAATGATGCAGCAATCCCTCTATCACCACCCTGGTCTCCTTGCTGCTCCTCAGatAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCCAGTACATGCCGCAGTGTGTATGTTGGGAACATTCATCCCCAGGTTACAGAATCTCTTCTTCAAGAGGTTTTCTCAAGCACAGGTCCCCTTGAAGGATGCAAAATCATTAGAAAGGAGAAGTCATCCTATGGTTTTGTGGATTACTTTGATCGCAGAGCTGCTGCGGTTGCTATTTTGTCTCTCAATGGGAGATATATTTTTGGGCAGCCTATTAAAGTCAACTGGGCATACGCTAGTAGCCAGAGGGAGGATACATCaggtcactttaatatttttgttggtgATCTTAGCCCTGAGGTTACTGATGCTACACTGTTTGCTTGCTTTTCTGTATATCCAAGCTGTTCTGATGCAAGGGTTATGTGGGATCAGAAAACTGGTCGTTCGAGGggatttggttttgtttccTTTCGGAGTCAACAGGAGGCACAAAGTGCAATAAATGATTTAAGTGGAAAATGGCTTGGAACTAGACAAATTCGTTGTAACTGGGCCACAAAAGGGGCTAATAATGGCAATGATGACAAGTCGGGTACAGATTCAAAAAGTGTTGTTGAGCTAACAAATGGAACATCTGAAGAAGGCCAAGAAAAGTACAATGATGATGCTCCAGATACGAATCCTCAGTATACTACAGTCTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGAACTCCACCGTCTTTTTCATGCACTTGGTGCTGGAACTATCGAGGATGTTCGGGTGCAGCGAGATAAAGGATTTGGTTTTGTTAGATACGGTACACATGATGAAGCAGCTCTTGCTATACAGATGGGTAACGCTCGGATTCTGTTTGGCAAGCCTATCAAGTGCTCGTGGGGTAGCAAGCCTACTCCTCCAGGAACAGCGTCTACTCCTCTTCCCCCACCCGCAGCTGCACATATGCCAGCCATTTCGGCCGCTGATCTTGCACAAATGGCCCTGAGCAGGATGGGTGGTACCCAAGCTCTTATGCATCAACACGGTCAGCAGGCGCTGAAGCAGGCAGCCATGGGAATGGGTGCCCCTGGGGCTAGTTTTGGTGCAGGATACCAGGGTCTTGCAACTTCTCAGCACCTTATGTATTATCAGTA 1226 0.4535 MQQQRLKQQAMMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQEVFSSTGPLEGCKIIRKEKSSYGFVDYFDRRAAAVAILSLNGRYIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQEAQSAINDLSGKWLGTRQIRCNWATKGANNGNDDKSGTDSKSVVELTNGTSEEGQEKYNDDAPDTNPQYTTVYVGNLAPEVTSVELHRLFHALGAGTIEDVRVQRDKGFGFVRYGTHDEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPAAAHMPAISAADLAQMALSRMGGTQALMHQHGQQALKQAAMGMGAPGASFGAGYQGLATSQHLMYYQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00498 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Bva06g00498 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Bva06g00498 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Bva06g00498 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Bva06g00498 408 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 404 - -
Bva06g00498 408 Gene3D - 130 210 IPR012677 -
Bva06g00498 408 CDD RRM3_TIA1_like 253 327 - -
Bva06g00498 408 Gene3D - 230 331 IPR012677 -
Bva06g00498 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Bva06g00498 408 SUPERFAMILY RNA-binding domain, RBD 240 331 IPR035979 GO:0003676
Bva06g00498 408 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 404 - -
Bva06g00498 408 CDD RRM1_TIA1_like 48 118 - -
Bva06g00498 408 SUPERFAMILY RNA-binding domain, RBD 45 212 IPR035979 GO:0003676
Bva06g00498 408 MobiDBLite consensus disorder prediction 208 249 - -
Bva06g00498 408 Gene3D - 1 129 IPR012677 -
Bva06g00498 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Bva06g00498 408 SMART rrm2_1 47 116 IPR003954 GO:0003676
Bva06g00498 408 SMART rrm2_1 254 323 IPR003954 GO:0003676
Bva06g00498 408 SMART rrm2_1 132 205 IPR003954 GO:0003676
Bva06g00498 408 MobiDBLite consensus disorder prediction 208 236 - -
Bva06g00498 408 SMART rrm1_1 132 205 IPR000504 GO:0003723
Bva06g00498 408 SMART rrm1_1 254 323 IPR000504 GO:0003723
Bva06g00498 408 SMART rrm1_1 47 116 IPR000504 GO:0003723
Bva06g00498 408 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00498 Bva-Chr6 5616229 5620834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00498 47 321 Eukaryotic Initiation Factors Gene Family AT3G16380 27.055 6.82e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00498 K13201 - jre:108986551 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00498 06 5616229 5620834 Bva06g00498 06 5616229 5620834 ECH