Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00492 ATGGCGACGAAGAAAAGCGACAAGCTTTATAAGGAattgaagaatgaaaagaataaaaaggatGCTCCTACAAACGATGAAAGCGTAGAAGGCAAAATTTTTGCTTCTTGCTCTTTCTCCAGTCTAGGCCTCCACCCTACCTTATGCGACCAGCTCCGGGAAAGGATGGGATTTGAAGTTCCAACCTTGGTGCAAGCTCAAGCTATTCCCGTTATTCTCTCAGGGCGCCATGTACTTGTTAATGCTGCCACTGGCACCGGGAAGACTGTTGCATACTTGGCACCAATTATTCATCATTTACAGAATTATGATCATCGGATTGAGCGGTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGCGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAATTATTGCACCGGTTTCATTGGATTGTTCCTGGATATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCTGTTCTTGTAGCAACTCCTGGGCGCCTTTTGGACCACTTGAAGAATACATCATCATTCATATACTCAAAGTTACGCTGGATTATATTTGATGAAGCTGATCGGATTTTGGAATTAggatttggaaaagaaatagaggaaaTACTAGATCATTTAGATACAAGAACAACAAACGATACAATGACAAAACACTCTGGGGTTTCAAGACAAAATCTGCTTTTATCAGCCACCTTAAATGAGAAAGTCAACCACCTTGCTAAAATTAGTCTAGAGAATCCAGTGACTATTGGTCTTGATGATAAAAcagcagaaaaaaaatcaaaaattgaaagccTTAGTCCGTCAGAATCTGATGAAGACAATGAAGACCAGTATCCCAGTAAAATACCAAGCTCTTCAATTGGTGATTATAAAGTCCCCACGCAGTTGATTCAGAGATATGTGAAAGTACCTTGTGGATCACGGCTTCCTGCACTTCTGTCCATTCTGAAGTATCTTTTTGAAAGGGAACCCTCCCAAAAGATTGTGGTATTCTTTTCAACATGTGATGCTGTAGACTTCCACTATTCTCTCTTAAGTGAATTTGAATTCTCATTCCATCCACAAACAGAAGCGGAAAACAAACAGATGTTTCTTGGATGCAAAATTTTTCGATTGCATGGGAATATGCAACAAGAGGATCGAAGAACCACTTTTCAGTCCTTTAAAACAGAGAAAGCAGCTCTTCTCTTGTCCACTGATGTTGCTGCTAGAGGCTTAGATTTTCCGAACGTTAGATGTATTGTACAATATGATTCTCCTGGGGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCACGGATTGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCTGTTGAAATAGATTATCTACAAGACTTGGAAAAACATGGTGTATCACTAACAGAGCTTCCTCTCCTCTCAGTGTTTGATAGTTTTCCGCTGTATGGTCAAAAAAACCATATCAAGAAGTTTGTTGCTATAGAGTCACATCCGTGGGTGCTTTGCCTCCAGAAGGCTCTTGAATCCTTCATCATGTCCAAGCCCAAGATGGACAAAAGTGCAAAGACGGGATTTTGCTCTTGGGTCCGTGCATATACGGCTCATCGTGGCGAgctgaagaaaatatttatgatcaAGAAACTACACCTAGGACATGTAGCCAAAAGTTTTGCATTAAAACAACAACCCTCCTTAGTTGGAAAATCATACGGGAAACAAActaagaagaggaagagattTCACAAGCAAGGTGAGATATCAAAAAGGAGAAAGGTTAGTAGTGTGACGAAATGCAGACCTTG 1826 0.3855 MATKKSDKLYKELKNEKNKKDAPTNDESVEGKIFASCSFSSLGLHPTLCDQLRERMGFEVPTLVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIHHLQNYDHRIERSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISVLVATPGRLLDHLKNTSSFIYSKLRWIIFDEADRILELGFGKEIEEILDHLDTRTTNDTMTKHSGVSRQNLLLSATLNEKVNHLAKISLENPVTIGLDDKTAEKKSKIESLSPSESDEDNEDQYPSKIPSSSIGDYKVPTQLIQRYVKVPCGSRLPALLSILKYLFEREPSQKIVVFFSTCDAVDFHYSLLSEFEFSFHPQTEAENKQMFLGCKIFRLHGNMQQEDRRTTFQSFKTEKAALLLSTDVAARGLDFPNVRCIVQYDSPGEATEYVHRVGRTARIGERGESLLFLQPVEIDYLQDLEKHGVSLTELPLLSVFDSFPLYGQKNHIKKFVAIESHPWVLCLQKALESFIMSKPKMDKSAKTGFCSWVRAYTAHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVGKSYGKQTKKRKRFHKQGEISKRRKVSSVTKCRP 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00492 608 SMART ultradead3 57 274 IPR014001 -
Bva06g00492 608 Pfam DEAD/DEAH box helicase 63 248 IPR011545 GO:0003676|GO:0005524
Bva06g00492 608 Gene3D - 2 263 IPR027417 -
Bva06g00492 608 CDD SF2_C_DEAD 307 457 - -
Bva06g00492 608 CDD DEADc_DDX31 48 261 - -
Bva06g00492 608 SMART DUF4217_3 510 575 IPR025313 -
Bva06g00492 608 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Bva06g00492 608 MobiDBLite consensus disorder prediction 579 594 - -
Bva06g00492 608 MobiDBLite consensus disorder prediction 271 297 - -
Bva06g00492 608 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 21 601 - -
Bva06g00492 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Bva06g00492 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 469 IPR027417 -
Bva06g00492 608 MobiDBLite consensus disorder prediction 1 26 - -
Bva06g00492 608 SMART helicmild6 365 448 IPR001650 -
Bva06g00492 608 MobiDBLite consensus disorder prediction 576 608 - -
Bva06g00492 608 MobiDBLite consensus disorder prediction 271 289 - -
Bva06g00492 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 260 IPR014001 -
Bva06g00492 608 Pfam Helicase conserved C-terminal domain 324 448 IPR001650 -
Bva06g00492 608 PANTHER RNA HELICASE 21 601 - -
Bva06g00492 608 Gene3D - 316 599 IPR027417 -
Bva06g00492 608 Pfam Domain of unknown function (DUF4217) 512 572 IPR025313 -
Bva06g00492 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 495 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00492 Bva-Chr6 5575009 5579696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00492 36 479 Eukaryotic Initiation Factors Gene Family AT5G11200 28.228 3.92e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00492 K14806 - gmx:100805157 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00492 06 5575009 5579696 Bva06g00492 06 5575009 5579696 ECH